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Welcome to the Dimensions-UCE-thrushes wiki!

Target Capture for Phylogenomic Analyses in South American Thrushes (Aves, Genus: Turdus)

This Wiki page contains details about what were the codes/pipelines used to process Illumina Reads for Phylogenomic Analyses for 28 Thrushes species spread out on South America, focus on Amazonia Biome. The idea of this wiki page was track, in a version control, the workflow used to process this kind of data, and share it.

There are a list of Repositories on GitHub which share codes and pipelines to help you, I will list some of them below, the ones I used to guide my workflow:

• 1. Antonelli Lab
• 2. Faircloth Lab, Phyluce
• 3. Tobias Hofmann
• 4. Albiorix
• 5. Mats Töpel
• 6. The Bioinformatics Group

WARNING MESSAGE: Be sure you are going to cite the right manuscript and/or repository for each code you used in your work.