Update vsc_options.rst #168
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: validation | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: Release | |
| jobs: | |
| build_and_validate: | |
| # The type of runner that the job will run on | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "windows", | |
| os: windows-latest, | |
| artifact: "bng_windows_cygwin.7z", | |
| build_type: "Release", | |
| cc: "gcc", | |
| cxx: "g++", | |
| archiver: "7z a", | |
| generators: "Ninja" | |
| } | |
| - { | |
| name: "linux", | |
| os: ubuntu-20.04, | |
| artifact: "bng_ubuntu_gcc.7z", | |
| build_type: "Release", | |
| cc: "gcc", | |
| cxx: "g++", | |
| archiver: "7z a", | |
| generators: "Ninja" | |
| } | |
| - { | |
| name: "mac", | |
| os: macos-latest, | |
| artifact: "bng_macos_clang.7z", | |
| build_type: "Release", | |
| cc: "clang", | |
| cxx: "clang++", | |
| archiver: "7za a", | |
| generators: "Ninja" | |
| } | |
| steps: | |
| - name: Checkout repo # and submodules | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| # Windows setup | |
| - name: Set up Cygwin | |
| if: startsWith(matrix.config.os, 'windows') | |
| uses: egor-tensin/setup-cygwin@v4 | |
| with: | |
| packages: cmake gcc-g++ autoconf automake libtool dos2unix pkg-config make | |
| # - name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: Setup ninja on windows | |
| if: startsWith(matrix.config.os, 'windows') | |
| uses: seanmiddleditch/gha-setup-ninja@v3 | |
| - name: Setup windows and untar libs | |
| if: startsWith(matrix.config.os, 'windows') | |
| working-directory: ./bng2 | |
| shell: C:\tools\cygwin\bin\bash.exe --login --norc -eo pipefail -o igncr '{0}' | |
| run: | | |
| cd /cygdrive/d/a/bionetgen/bionetgen/bng2/Network3 | |
| mkdir m4 | |
| dos2unix configure.ac Makefile.am Makefile.cmake | |
| tar xvfz ../libsource/cvode-2.6.0.tar.gz | |
| tar xvfz ../libsource/muparser_v2_2_4.tar.gz | |
| # Unix setup | |
| - name: Install dependencies on ubuntu | |
| if: startsWith(matrix.config.name, 'linux') | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install cmake | |
| cmake --version | |
| gcc --version | |
| - name: Install dependencies on macos | |
| if: startsWith(matrix.config.os, 'mac') | |
| # also install p7zip if we are achiving | |
| run: | | |
| brew install cmake | |
| cmake --version | |
| # look at environment variables for debugging | |
| - name: Print env | |
| run: | | |
| echo github.event.action: ${{ github.event.action }} | |
| echo github.event_name: ${{ github.event_name }} | |
| # Unix compilation | |
| - name: Make-unix | |
| if: ${{ startsWith(matrix.config.name, 'mac') || startsWith(matrix.config.name, 'linux') }} | |
| shell: bash | |
| working-directory: ./bng2 | |
| run: | | |
| make | |
| # Windows compilation | |
| - name: Make-network-windows | |
| if: startsWith(matrix.config.name, 'windows') | |
| shell: C:\tools\cygwin\bin\bash.exe --login --norc -eo pipefail -o igncr '{0}' | |
| run: | | |
| cd /cygdrive/d/a/bionetgen/bionetgen/bng2 | |
| export _BNGPATH=$PWD | |
| cd Network3 | |
| autoreconf --no-recursive --install | |
| ./configure --disable-shared --prefix=${_BNGPATH} | |
| make | |
| mkdir /cygdrive/d/a/bionetgen/bionetgen/bng2/bin | |
| cp src/run_network.exe /cygdrive/d/a/bionetgen/bionetgen/bng2/bin/run_network.exe | |
| # - name: Make-nfsim-windows | |
| # if: startsWith(matrix.config.name, 'windows') | |
| # shell: C:\tools\cygwin\bin\bash.exe --login --norc -eo pipefail -o igncr '{0}' | |
| # working-directory: ./bng2 | |
| # run: | | |
| # cd /cygdrive/d/a/bionetgen/bionetgen/bng2/nfsim_src | |
| # mkdir build | |
| # cd build | |
| # /cygdrive/c/Program\ Files/CMake/bin/cmake.exe -G "Ninja" .. | |
| # ninja | |
| # cp NFsim.exe ../../bin/. | |
| # - name: Make-nfsim-unix | |
| # if: ${{ startsWith(matrix.config.name, 'mac') || startsWith(matrix.config.name, 'linux') }} | |
| # working-directory: ./bng2 | |
| # run: | | |
| # mkdir nfsim_src/build | |
| # cd nfsim_src/build | |
| # cmake --build ${{github.workspace}}/bng2/nfsim_src/build --config ${{env.BUILD_TYPE}} | |
| # now everything is compiled, we validate | |
| # windows validation | |
| - name: validate for windows | |
| if: startsWith(matrix.config.name, 'windows') | |
| shell: C:\tools\cygwin\bin\bash.exe --login --norc -eo pipefail -o igncr '{0}' | |
| run: | | |
| cd /cygdrive/d/a/bionetgen/bionetgen/bng2/Validate | |
| perl validate_examples.pl | |
| # unix validation | |
| - name: validate for unix | |
| if: ${{ startsWith(matrix.config.name, 'mac') || startsWith(matrix.config.name, 'linux') }} | |
| shell: bash | |
| working-directory: ./bng2/Validate | |
| run: | | |
| perl validate_examples.pl | |
| # bundling everything | |
| # unix first | |
| - name: Prepare unix bundle | |
| if: ${{ startsWith(matrix.config.name, 'mac') || startsWith(matrix.config.name, 'linux') }} | |
| working-directory: ./bng2 | |
| run: | | |
| mkdir bng_bundle | |
| cp BNG2.pl CHANGES.txt CREDITS.txt ../LICENSE VERSION bng_bundle/. | |
| cp -r Models2 Network3 Perl2 Validate bin bng_bundle/. | |
| tar cvf bng_bundle.tar bng_bundle | |
| - name: Archive unix bundle | |
| if: ${{ startsWith(matrix.config.name, 'mac') || startsWith(matrix.config.name, 'linux') }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: bng_bundle_${{ matrix.config.name }} | |
| path: ${{github.workspace}}/bng2/bng_bundle.tar | |
| # windows next | |
| - name: Prepare windows bundle | |
| if: startsWith(matrix.config.name, 'windows') | |
| run: | | |
| cd D:/a/bionetgen/bionetgen/bng2 | |
| mkdir bng_bundle | |
| cp BNG2.pl bng_bundle/. | |
| cp CHANGES.txt bng_bundle/. | |
| cp CREDITS.txt bng_bundle/. | |
| cp ../LICENSE bng_bundle/. | |
| cp VERSION bng_bundle/. | |
| cp VERSION bng_bundle/. | |
| cp -r Models2 bng_bundle/. | |
| cp -r Network3 bng_bundle/. | |
| cp -r Perl2 bng_bundle/. | |
| cp -r Validate bng_bundle/. | |
| cp -r bin bng_bundle/. | |
| cp C:/tools/cygwin/bin/cygwin*dll bng_bundle/bin/. | |
| cp C:/tools/cygwin/bin/cygstdc*dll bng_bundle/bin/. | |
| cp C:/tools/cygwin/bin/cygz*dll bng_bundle/bin/. | |
| cp C:/tools/cygwin/bin/cyggcc*dll bng_bundle/bin/. | |
| tar cvf bng_bundle.tar bng_bundle | |
| # /c/tools/cygwin/bin/cygwin1.dll | |
| # needed files: cygwin1.dll,cygstdc++-6.dll,cygz.dll,cyggcc_s-seh-1.dll | |
| # potentially we also need 1) libgcc_s_dw2-1.dll, 2) libstdc++-6.dll | |
| - name: Archive windows bundle | |
| if: startsWith(matrix.config.name, 'windows') | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: bng_bundle_${{ matrix.config.name }} | |
| path: D:/a/bionetgen/bionetgen/bng2/bng_bundle.tar |