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1. CRISPRCasTyper CRISPRCasTyper Public

   CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

   Python 93 17

2. DAtest DAtest Public

   Compare different differential abundance and expression methods

   R 50 9

3. MicEco MicEco Public

   Various functions for analysis of microbial community data

   R 41 11

4. microUCPH/amplicon_data_analysis microUCPH/amplicon_data_analysis Public

   Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

   HTML 11 6

5. RCon3D RCon3D Public

   3D Analysis of confocal images of microbial biofilms/communities

   R 5 1

6. MAGinator MAGinator Public

   MAGinator - Accurate SNV calling and profiling of MAGs

   Python 18 1