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Symbolic alts - quick links #996

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davmlaw opened this issue Feb 21, 2024 · 2 comments
Open

Symbolic alts - quick links #996

davmlaw opened this issue Feb 21, 2024 · 2 comments

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@davmlaw
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davmlaw commented Feb 21, 2024

For a few quick links, we generate variant strings, eg gnomAD, varsome etc

These don't seem to work for symbolic alts, we should work out how to get that to work, eg this fails:

https://varsome.com/variant/hg38/20%3A50899224-50908779%20%3CINV%3E

Probably involves converting to g.HGVS

https://app.testiny.io/VG/testcases/tcf/6/tc/187/edit

@EmmaTudini
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Moving to next deploy

@davmlaw
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davmlaw commented Jan 30, 2025

Testing: Failed for UCSC links - forgot to convert to int so damn Javascript just added "20" to the end of the coordinate!

range = `chr${parts[1]}%3A${parts[2] - 20}-${parts[3] + 20}`;

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