nextflow environment fix #4
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typo
Previously, there were instructions to install nextflow. They are removed but nextflow was not added to environment file.
The docker container had caused issues for us due to sra-tools configuration. It was configured as far as i can tell in the image. I think the requirement was removed on V3.0.1. This image uses the latest version of sra-tools and has worked without issues so far. It's built from this: ```FROM ayyuan/fasterq-dump:1.0 # Download, extract sratoolkit, and clean up. RUN wget -q http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/current/sratoolkit.current-ubuntu64.tar.gz -O /tmp/sratoolkit.tar.gz \ && tar -xzf /tmp/sratoolkit.tar.gz -C /opt \ && rm -r /tmp/sratoolkit.tar.gz /opt/sratoolkit.3.0.0-ubuntu64 # Set the PATH environment variable. ENV PATH="/opt/sratoolkit.3.1.1-ubuntu64/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" # Set the default command to run CMD ["bash"]```
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Adding nextflow to environment and fixing typo on readme - not tested.
updating the sra-tools container to avoid config bug - tested.