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@SIMEXP

SIMEXP

Laboratory for brain simulation and exploration

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  1. load_confounds load_confounds Public archive

    Load fMRIprep confounds in python

    Python 35 12

  2. niak niak Public

    GNU Octave library for connectivity analysis in large fMRI datasets

    MATLAB 27 21

  3. psom psom Public archive

    pipeline system for octave and matlab

    MATLAB 24 13

  4. fmriprep-denoise-benchmark fmriprep-denoise-benchmark Public

    Benchmark denoising strategies available from fmriprep.

    Python 15 6

  5. fmri_predict fmri_predict Public

    predicting fmri activaties from connectome

    Jupyter Notebook 14 11

  6. fmriprep-slurm fmriprep-slurm Public

    Generate and run SLURM jobs on HPCs

    Python 11 3

Repositories

Showing 10 of 116 repositories
  • rs-autoregression-prediction Public

    Autoregressive model on resting state time series benchmark

    SIMEXP/rs-autoregression-prediction’s past year of commit activity
    Python 1 MIT 1 1 1 Updated Sep 4, 2024
  • Repo2Data Public

    Automatic data fetcher from the web

    SIMEXP/Repo2Data’s past year of commit activity
    Python 7 MIT 3 7 0 Updated Sep 4, 2024
  • wonkyconn Public

    Evaluating the residual motion in fMRI connectome and visualise reports

    SIMEXP/wonkyconn’s past year of commit activity
    Python 1 MIT 0 3 3 Updated Aug 26, 2024
  • cwas_simulation Public

    Simulate a connectome wide association study with real data

    SIMEXP/cwas_simulation’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Aug 15, 2024
  • general_class_balancer Public Forked from mleming/general_class_balancer

    Data matching algorithm for categorical and continuous variables

    SIMEXP/general_class_balancer’s past year of commit activity
    Python 0 MIT 2 0 1 Updated Aug 12, 2024
  • wrangling-phenotype Public

    get ukbb data in shape for other projects

    SIMEXP/wrangling-phenotype’s past year of commit activity
    Python 0 MIT 0 3 10 Updated Jul 17, 2024
  • simexp.github.io Public

    website of the SIMEXP lab

    SIMEXP/simexp.github.io’s past year of commit activity
    Python 0 CC-BY-4.0 0 8 0 Updated Jun 18, 2024
  • giga_preprocess2 Public

    Preprocess datasets using fMRIPrep

    SIMEXP/giga_preprocess2’s past year of commit activity
    Shell 0 MIT 1 0 2 Updated May 28, 2024
  • fmriprep-denoise-benchmark-reproducible Public

    Create the atlases for the benchmark - parcels has to be individual, none connected blobs

    SIMEXP/fmriprep-denoise-benchmark-reproducible’s past year of commit activity
    0 MIT 0 0 0 Updated May 16, 2024
  • difumo_segmentation Public

    This utility download and segment DiFuMo atlas, so each component is exactly one independent region.

    SIMEXP/difumo_segmentation’s past year of commit activity
    Python 0 0 2 0 Updated May 16, 2024
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