Adds concept categorization dataset exception file. #34
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…rization datasets. Closes #33
nicolasdugue
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* Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33
nicolasdugue
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Jul 19, 2024
* adding dictionary argument to avoid default initialization * Update issue templates * Add plotly as dev dependency. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. (#5) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix files and add templates (#8) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Fix files and add templates (#8) (#10) (#11) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Dev (#12) * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Edit PR template. * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Edit PR template. * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * [AUTO-COMMIT] Update release version to v1.2.0. Files changed: M pyproject.toml M sinr/__init__.py * Fix #50 by changing categorization and evaluation exception files. * Update README.rst (#89) * Update README.rst Update installation, example and publications * Update README.rst * Update README.rst * Delete notebooks/transfert.ipynb * Delete notebooks/preproc.ipynb * Update build-doc.yml (#92) Change checkout@master to checkout@v2 * Update pyproject.toml (#93) * Update pyproject.toml Add xgboost to dependencies * Update pyproject.toml * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> --------- Co-authored-by: anthony <anthony.perez@univ-orleans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Thibault Prouteau <thibault.prouteau.etu@univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> Co-authored-by: Guillot Simon <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
nicolasdugue
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Jul 22, 2024
* adding dictionary argument to avoid default initialization * Update issue templates * Add plotly as dev dependency. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. (#5) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix files and add templates (#8) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Fix files and add templates (#8) (#10) (#11) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Dev (#12) * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Edit PR template. * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Edit PR template. * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * [AUTO-COMMIT] Update release version to v1.2.0. Files changed: M pyproject.toml M sinr/__init__.py * Fix #50 by changing categorization and evaluation exception files. * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Update README.rst (#89) * Update README.rst Update installation, example and publications * Update README.rst * Update README.rst * Delete notebooks/transfert.ipynb * Delete notebooks/preproc.ipynb * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method * Update build-doc.yml (#92) Change checkout@master to checkout@v2 * Update pyproject.toml (#93) * Update pyproject.toml Add xgboost to dependencies * Update pyproject.toml * 99 diachronic features (#100) * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * Diachronic features * Update publications.rst --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> --------- Co-authored-by: anthony <anthony.perez@univ-orleans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Thibault Prouteau <thibault.prouteau.etu@univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> Co-authored-by: Guillot Simon <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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* Joss submission * Update joss * Proof read and modify some sentences. * Update paper.md * Joss paper updated with edits * Adding DOIs * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method * Merging new version of SINr to joss branch (#101) * adding dictionary argument to avoid default initialization * Update issue templates * Add plotly as dev dependency. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. (#5) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix files and add templates (#8) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Fix files and add templates (#8) (#10) (#11) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Dev (#12) * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Edit PR template. * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix PR template not appearing. * Fix PR template not appearing. * Edit PR template. * Fix files and add templates (#8) (#10) * Remove unwanted graph_text files from main branch. * Remove unwanted graph_text files from main branch. * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Create pull request templates and fix issue template. (#7) * Remove unwanted graph_text files from main branch. (#5) (#9) * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * Fix bug leading to deterministic Louvain as a result of setting networkit.setNumberOfThreads to 1. * Update documentation. * Fix miswritten string in graph_embeddings * Fix log string Fix log string in in for number of threads in graph-embeddings. * Fix preprocess for lowering words * fixing the obj_stereotypes/descriptors bug (#19) Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 17 similarity evaluation of embeddings (#21) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * remove pk file and add fetch oanc --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> * 24 workflow for tests (#25) * add workflow to run tests on push and pull request * workflow test on current branch * workflow test on current branch * add requirement.txt * remove tests from sinr folder * 20 allowing for lexical exceptions in text extraction function (#29) * similarity evaluation from txt file and dataset * rename evaluation in evaluate * similarity with MEN and WS353 datasets * similarity unit tests * sparsify and binarize SINrVectors * notebook sim + sparsify + binarize * add new path to oanc SINrVectors * Add oanc model * allowing for exceptions in preprocess filtering + modifying named entity options to choose between chunking, tagging and deleting * rename function to match * Pushing correct refactored function to take into account exception list and lowering * Deleting deprecated tests * Deleting oanc model --------- Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: simon.guillot@univ-lemans.fr <sguillot@lst.clusterlst.univ-lemans.fr> * taking into account lower for similarity dataset and adding SCWS dataset (#30) * 31 missing exceptions dataset for similarity (#32) * Adds exceptions.txt which contains the words required for sim datasets: scws, ws, men * rename exception file * Adds concept categorization dataset exception file. (#34) * Adds concept categorization dataset exception file. * Adds concept categorization dataset exception file. * Adds single file for exceptions, combination of similarity and categorization datasets. Closes #33 * Adds workflow configuration to automatically build docs html pages. (#36) * Adds workflow configuration to automatically build docs html pages. * Update build-doc.yml * 37 workflow to build and publish sinr (#38) * Add poetry-bumpversion. * Workflow for PyPi deployment. * Workflow for PyPi deployment. * Update deploy.yml * Revert "Update deploy.yml" This reverts commit 6ccfbff. * Revert "Revert "Update deploy.yml"" This reverts commit 32b14e2. * 39 similarity simlex and file name depending on time (#40) * update notebook evaluate + add fetch simlex * evaluate notebook update + file name depending on the time of creation for fetch methods * SimLex 999 665 222 111 comments * correction of SIMLEX to SimLex * 41 dimensions filtering (#42) * add remove dimensions with nnz thresholds min and max + unit test * correction dataset fetch for similarity, name file with current time (milliseconds) * correction import time * detection of thresholds to filter dimensions based on nnz * Add tabulate in requirements.txt --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 43 update pyprojecttoml for documentation (#44) * Update pyproject.toml * Update pyproject.toml * [AUTO-COMMIT] Update release version to v1.2.0. Files changed: M pyproject.toml M sinr/__init__.py * Fix #50 by changing categorization and evaluation exception files. * Update README.rst (#89) * Update README.rst Update installation, example and publications * Update README.rst * Update README.rst * Delete notebooks/transfert.ipynb * Delete notebooks/preproc.ipynb * Update build-doc.yml (#92) Change checkout@master to checkout@v2 * Update pyproject.toml (#93) * Update pyproject.toml Add xgboost to dependencies * Update pyproject.toml * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> --------- Co-authored-by: anthony <anthony.perez@univ-orleans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Thibault Prouteau <thibault.prouteau.etu@univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> Co-authored-by: Guillot Simon <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> * 99 diachronic features (#100) * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * Diachronic features * Update publications.rst --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * remove disconnected nodes from the graph (#105) * remove isolated nodes from the graph * test update * 98 multiple edges - temporary fix (#107) * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * temporary fix multiple (i,j) entries issue in cooccurrence matrix --------- Co-authored-by: Nico <nicolas.dugue@univ-lemans.fr> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * 108 incompatibility numpy pandas (#109) * Dev (#94) * factory method to load embeddings at the w2v format (#53) * Revert "factory method to load embeddings at the w2v format (#53)" This reverts commit 7da0e99. * 52 loading vectors such as w2v or spine ones (#57) * factory method to load embeddings at the w2v format * Update graph_embeddings.py, small fix * Adding distRatio (#59) * moving dist ratio in sinr.text.evaluate, adding unit tests (#61) * commenting cosine_dist, pick_intruder, dist_ratio, dist_ratio_dim, intra_sim, inter_sim methods * moving distRatio from graph_embeddings to text/evaluate * tests unitaires distratio * cleaning comments * adding creation and deletion of w2v file for distRatio unit tests * fix with_value() argument (#65) Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * load_from_word2vec model s name bug fixed (#70) * missing word list bug fixed (#68) * 73 wrong community memberships update when filtering dimensions (#75) * update of community_membership when filtering dimensions * sinr filtered: removing dimensions and updating communities_sets * fixed code to pass tests * comments * 76 preprocessing multiple documents (#77) * preprocessing by documents * Tests : preprocessing by sentences and by documents * adding size indicator for spacy model and downloading spacy model in tests workflow' * downloading spacy * 78 classification (#80) * preprocess : minimal length of documents kept + tests * vectorizer + test * classification's methods + tests * xgboost interpretable dimensions * adding xgboost for test workflow * classification, fit and score test modification * get_dimension_stereotypes on removed community fixed (#82) * Filtering words using a dictionnary (#84) * Exceptions list, path to save / load SINrVectors (#86) * not removing words when in exceptions list * add path to method save * exceptions list to set + test exceptions list * path parameter method load * new exceptions list for similarity * optionnal parameter path for load and save methods * 90 notebooks (#91) * fix save, load, dim_nnz_thresholds + add obj_nnz_count * add notebook with gutenberg example * bnc model for notebook * notebook bnc * notebook frwac * remove nb evaluate * add tqdm to sparsify method --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> * Update deploy.yml * [AUTO-COMMIT] Update release version to v1.3.1. (#96) Files changed: M pyproject.toml M sinr/__init__.py Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> * doc update (#97) * doc update * links update * remove doc, quality, build * fix LICENSE link * Update conf.py --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> * Correcting conflict between pandas and numpy --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> Co-authored-by: nicolasdugue <dugue@skinner.clusteretu.univ-lemans.fr> * Removing conflict between numpy and karateclub, karateclub not being used in sinr * Solving depency problem with docutils --------- Co-authored-by: Thibault PROUTEAU <thibault.prouteau@univ-lemans.fr> Co-authored-by: Simon Guillot <47661058+SimonGuillot@users.noreply.github.com> Co-authored-by: Thibault PROUTEAU <thibault.prouteau@gmail.com> Co-authored-by: Anna B <72624798+aberanger@users.noreply.github.com> Co-authored-by: Simon Guillot <simon.guillot@univ-lemans.fr> Co-authored-by: anthony <anthony.perez@univ-orleans.fr> Co-authored-by: Thibault Prouteau <thibault.prouteau.etu@univ-lemans.fr> Co-authored-by: Guillot Simon <sguillot@lst.clusterlst.univ-lemans.fr> Co-authored-by: Beranger Anna <aberanger@lst.clusterlst.univ-lemans.fr> Co-authored-by: Anna Beranger <anbberanger@gmail.com> Co-authored-by: nicolasdugue <nicolasdugue@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: nicolasdugue <dugue@skinner.clusteretu.univ-lemans.fr>
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Description
Add all words from categorization datasets to the categorization exception file (words from Battig are not included since there is sometimes mwe). The files contains words from AP, ESSLI and BLESS categorization datasets.
Fixes #33, Closes #33
Type of change
Please delete options that are not relevant.
Checklist