Merge pull request #19 from vinferrer/afni

Change unit test docker image to an image with afni installed
SPiN-Lab · Oct 27, 2021 · c46babf · c46babf
2 parents 0a771d1 + 37bca57
commit c46babf
Showing 1 changed file with 9 additions and 4 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -10,7 +10,7 @@ jobs:
   py36_unittest:
     working_directory: /tmp/src/connPFM
     docker:
-      - image: continuumio/miniconda3
+      - image: sento4000/afni_miniconda
     steps:
       - checkout
       - persist_to_workspace:
@@ -22,6 +22,7 @@ jobs:
           command:  |
             if [[ -e /opt/conda/envs/py36_env ]]; then
                 echo "Restoring environment from cache"
+                cp -r /opt/conda/envs/py39_env /opt/miniconda-latest/envs/py39_env
                 source activate py36_env
             else
                 conda create -n py36_env python=3.6 numpy -yq
@@ -40,7 +41,7 @@ jobs:
   py37_unittest:
     working_directory: /tmp/src/connPFM
     docker:
-      - image: continuumio/miniconda3
+      - image: sento4000/afni_miniconda
     steps:
       - checkout
       - persist_to_workspace:
@@ -52,6 +53,7 @@ jobs:
           command:  |
             if [[ -e /opt/conda/envs/py37_env ]]; then
                 echo "Restoring environment from cache"
+                cp -r /opt/conda/envs/py39_env /opt/miniconda-latest/envs/py39_env
                 source activate py37_env
             else
                 conda create -n py37_env python=3.7 numpy -yq
@@ -70,7 +72,7 @@ jobs:
   py38_unittest:
     working_directory: /tmp/src/connPFM
     docker:
-      - image: continuumio/miniconda3
+      - image: sento4000/afni_miniconda
     steps:
       - checkout
       - persist_to_workspace:
@@ -82,6 +84,7 @@ jobs:
           command:  |
             if [[ -e /opt/conda/envs/py38_env ]]; then
                 echo "Restoring environment from cache"
+                cp -r /opt/conda/envs/py39_env /opt/miniconda-latest/envs/py39_env
                 source activate py38_env
             else
                 conda create -n py38_env python=3.8 numpy -yq
@@ -127,10 +130,11 @@ jobs:
           paths:
             - "/opt/conda/envs/py39_env"
 
+
   py39_unittest_and_coverage:
     working_directory: /tmp/src/connPFM
     docker:
-      - image: continuumio/miniconda3
+      - image: sento4000/afni_miniconda
     steps:
       - attach_workspace:  # get connPFM
           at: /tmp
@@ -142,6 +146,7 @@ jobs:
             apt-get update
             apt-get install -yqq make
             apt-get install -yqq curl
+            cp -r /opt/conda/envs/py39_env /opt/miniconda-latest/envs/py39_env
             source activate py39_env
             make unittest
       - codecov/upload: