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Setup connPFM installation with pip #8

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merged 7 commits into from
Oct 6, 2021
Merged

Setup connPFM installation with pip #8

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d152b0c
add required libraries
Oct 6, 2021
d34e752
add dummy main
Oct 6, 2021
e840396
add entrypoint so connPFM can be executed from console
vinferrer Oct 6, 2021
6e3c026
update dummy workflow to work with print
vinferrer Oct 6, 2021
1dc6631
add end line
vinferrer Oct 6, 2021
56ef403
add install instructions
vinferrer Oct 6, 2021
43af456
transform install instructions to code lines
vinferrer Oct 6, 2021
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6 changes: 6 additions & 0 deletions README.md
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Expand Up @@ -9,6 +9,12 @@ A template repo to use for new repositories.
[![Documentation Status](https://readthedocs.org/projects/connPFM/badge/?version=latest)](http://connPFM.readthedocs.io/en/latest/?badge=latest)
[![Codecov](https://codecov.io/gh/SPiN-Lab/connPFM/branch/main/graph/badge.svg)](https://codecov.io/gh/SPiN-Lab/connPFM)

## Installation
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```
git clone https://github.com/SPiN-Lab/connPFM.git
cd connPFM
pip3 install -e .[all]
```
## Instructions

1. Replace `connPFM` with the new repo name across the whole repository.
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12 changes: 12 additions & 0 deletions connPFM/connPFM.py
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@@ -0,0 +1,12 @@
import logging
import sys

LGR = logging.getLogger(__name__)
LGR.setLevel(logging.INFO)

def _main(argv=None):
print("ConnPFM is in development, we will implement main workflow in future releases")
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if __name__ == "__main__":
_main(sys.argv[1:])
2 changes: 2 additions & 0 deletions connPFM/info.py
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Expand Up @@ -51,10 +51,12 @@
REQUIRES = [
"duecredit",
"joblib",
"matplotlib",
"nibabel",
"nilearn",
"numpy>=1.15",
"scipy>=1.3.3",
"sklearn"
]

TESTS_REQUIRES = [
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4 changes: 4 additions & 0 deletions setup.cfg
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Expand Up @@ -20,3 +20,7 @@ log_cli = true
* =
resources/*
tests/data/*

[options.entry_points]
console_scripts =
connPFM=connPFM.connPFM:_main