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Matlab scripts that facilitate analysis of a variety of spectroscopic and microscopic data related to methods relevant to my phd in biophysics.

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MIT license
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Schnitzelen/specTools

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41 Commits
AscFile.m
AscFile.m
 
 
CsvFile.m
CsvFile.m
 
 
IfxFile.m
IfxFile.m
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
TPExExperiment.m
TPExExperiment.m
 
 
TxtFile.m
TxtFile.m
 
 
binImage.m
binImage.m
 
 
calc2Pabs.m
calc2Pabs.m
 
 
calcQY.m
calcQY.m
 
 
calculateExponentialDecay.m
calculateExponentialDecay.m
 
 
calculateExponentialDecayStretch.m
calculateExponentialDecayStretch.m
 
 
calculateGradient.m
calculateGradient.m
 
 
calculateMolarAttenuation.m
calculateMolarAttenuation.m
 
 
calculateQuantumYield.m
calculateQuantumYield.m
 
 
collectLifetimeData.m
collectLifetimeData.m
 
 
collectTwoPhotonExcitationData.m
collectTwoPhotonExcitationData.m
 
 
compileStructFromKeyValuePairs.m
compileStructFromKeyValuePairs.m
 
 
determineDecayIndex.m
determineDecayIndex.m
 
 
determineNumberOfExponentialDecays.m
determineNumberOfExponentialDecays.m
 
 
determineSpectralRange.m
determineSpectralRange.m
 
 
estimateOptimalAbsorptionOverlap.m
estimateOptimalAbsorptionOverlap.m
 
 
estimateOptimalEmissionOverlap.m
estimateOptimalEmissionOverlap.m
 
 
gaussianInterpolation.m
gaussianInterpolation.m
 
 
generateLatexReport.m
generateLatexReport.m
 
 
getKeysAndValuesFromHashTable.m
getKeysAndValuesFromHashTable.m
 
 
getSubFolders.m
getSubFolders.m
 
 
importPackages.m
importPackages.m
 
 
isInQuantumYieldTable.m
isInQuantumYieldTable.m
 
 
listExperimentFilesInDir.m
listExperimentFilesInDir.m
 
 
listFoldersInDir.m
listFoldersInDir.m
 
 
multi2PEx.m
multi2PEx.m
 
 
planQuantumYieldExperiment.m
planQuantumYieldExperiment.m
 
 
quantumYieldComparison.m
quantumYieldComparison.m
 
 
read2PEx.m
read2PEx.m
 
 
readAbs.m
readAbs.m
 
 
readAsc.m
readAsc.m
 
 
readEm.m
readEm.m
 
 
readEx.m
readEx.m
 
 
readFLIM.m
readFLIM.m
 
 
readIfx.m
readIfx.m
 
 
readInformationFromFileName.m
readInformationFromFileName.m
 
 
readLif.m
readLif.m
 
 
readMAC.m
readMAC.m
 
 
readMsr.asv
readMsr.asv
 
 
readMsr.m
readMsr.m
 
 
readRhe.m
readRhe.m
 
 
readSdt.m
readSdt.m
 
 
readSpe.m
readSpe.m
 
 
readThd.m
readThd.m
 
 
ref_extinction_coefficients.csv
ref_extinction_coefficients.csv
 
 
ref_polarity.csv
ref_polarity.csv
 
 
ref_quantum_yield.csv
ref_quantum_yield.csv
 
 
ref_refractive_index.csv
ref_refractive_index.csv
 
 
specTools.asv
specTools.asv
 
 
specTools.m
specTools.m
 
 
splitStringIntoValueAndUnit.m
splitStringIntoValueAndUnit.m
 
 
tpa_reference_0,1MNaOH_Flu.csv
tpa_reference_0,1MNaOH_Flu.csv
 
 
tpa_reference_CCl4_Cou540A.csv
tpa_reference_CCl4_Cou540A.csv
 
 
tpa_reference_DCM_Per.csv
tpa_reference_DCM_Per.csv
 
 
tpa_reference_MeOH_Cou485.csv
tpa_reference_MeOH_Cou485.csv
 
 
tpa_reference_MeOH_LucY.csv
tpa_reference_MeOH_LucY.csv
 
 
tpa_reference_MeOH_Rho6G.csv
tpa_reference_MeOH_Rho6G.csv
 
 
tpa_reference_MeOH_RhoB.csv
tpa_reference_MeOH_RhoB.csv
 
 
updateData.m
updateData.m
 
 
updated_property.m
updated_property.m
 
 
workOnFolder.m
workOnFolder.m
 
 
wrap2PEx.m
wrap2PEx.m
 
 
wrap2Pabs.m
wrap2Pabs.m
 
 
wrapAbs.m
wrapAbs.m
 
 
wrapEm.m
wrapEm.m
 
 
wrapEx.m
wrapEx.m
 
 
wrapFLIM.m
wrapFLIM.m
 
 
wrapMAC.m
wrapMAC.m
 
 
wrapQY.m
wrapQY.m
 
 
writeLatexTable.m
writeLatexTable.m
 
 

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specTools

Matlab scripts that facilitate analysis of a variety of spectroscopic and microscopic data related to methods relevant to my phd in biophysics.

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Matlab scripts that facilitate analysis of a variety of spectroscopic and microscopic data related to methods relevant to my phd in biophysics.

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matlab characterization phd microscopy spectroscopy dataanalysis

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