This repository contains data and references for testing purpose only.
We recommend to have a look at the Sarek repository or at the Sarek website, or to join the gitter channels for some direct contact with developers: Sarek channel.
Previously known as the Cancer Analysis Workflow (CAW), Sarek is a workflow tool designed to run analyses on WGS data from regular samples or tumour / normal pairs, including relapse samples if required.
Sarek was developed at the National Genomics Infastructure and National Bioinformatics Infastructure Sweden which are both platforms at SciLifeLab.
If you would like to contribute to this pipeline, please see the contributing guidelines.
For further information or help, don't hesitate to get in touch on Gitter or contact us: maxime.garcia@scilifelab.se, szilveszter.juhos@scilifelab.se
