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Rewrote docker containers using bioconda environment.yml ? #551
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Tried to update our most complicated container (the one with the most tools:
But the What do you think? |
Personally, I'd say this is an improvement, as its much simpler and relies on packages that aare ultimately tested by everyone in the bioconda community, which should in general be more reproducible and reliable. I see your point with 200+MB more for the image, but wouldn't see this as the biggest issue here - its not 1GB+ and most people won't really care about 200MB more to download. |
You may be able to reduce the size somewhat by putting an |
Good point, I'll try that ;-) |
@apeltzer |
@marcelm tried it, and it's now 387 MB so almost 100 MB down, which I can accept given the simplicity it will give us in installing all the tools. |
For what it's worth, I've ported the MethylSeq and RNA pipelines to this method now and I'm totally in love with it 😄 Especially with the cool |
closed by #607 |
cf SciLifeLab/NGI-RNAseq#216
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