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fix input for RunAscat (was not a set) #726

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Feb 15, 2019
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fix input for RunAscat (was not a set) #726

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592a5b4
fix input for RunAscat (was not a set)
maxulysse Feb 14, 2019
2e1afe2
update CHANGELOG
maxulysse Feb 14, 2019
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -32,6 +32,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.

### `Fixed`
- [#720](https://github.com/SciLifeLab/Sarek/pull/720) - bamQC is now run on the recalibrated bams, and not after MarkDuplicates
- [#726](https://github.com/SciLifeLab/Sarek/pull/726) - Fix Ascat ref file input (one file can't be a set)

## [2.2.2] - 2018-12-19

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2 changes: 1 addition & 1 deletion somaticVC.nf
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Expand Up @@ -640,7 +640,7 @@ process RunAscat {

input:
set idPatient, idSampleNormal, idSampleTumor, file(bafNormal), file(logrNormal), file(bafTumor), file(logrTumor) from convertAlleleCountsOutput
set file(acLociGC) from Channel.value([referenceMap.acLociGC])
file(acLociGC) from Channel.value([referenceMap.acLociGC])

output:
set val("ascat"), idPatient, idSampleNormal, idSampleTumor, file("${idSampleTumor}.*.{png,txt}") into ascatOutput
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