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CAW 1.2.5
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@maxulysse maxulysse released this 18 Jan 14:40
· 1000 commits to master since this release
1.2.5
9fd0a45
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Learn about vigilant mode.
  • Fixed version of COSMIC GRCh37 v83
  • Add delivery README
  • Write an error message when --sampleDir does not find any FASTQ files
  • Document use of the --sampleDir option
  • Add CAW Contributing Guidelines
  • Add Issue Templates
  • Add Release Checklist
  • Update Nextflow to 0.26.0 (new fancy report + AWS Batch)
  • Add extra time on Travis CI testing
  • Replace bundleDir by params.genome_base
  • Update MultiQC to 1.3 (MEGAQC FTW)
  • Add --outDir
  • Add base.config for ConcatVCF process
  • Add awsbatch profile
  • Add aws-batch.config config file
  • Move and rename some test files
  • Add new --noBAMQC params (failing in AWS Batch, and sometimes on Bianca)
  • Fix file specification for recalibrationReport in RecalibrateBam process (got error on AWS Batch)
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