GitHub - Sh1384/Science_Fair_2022_Code: This repository holds all the code written and run for the project "Predicting Cancer Prognosis and Risk with Epigenetic Germline Variants Underlying Topological Associated Domains"

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This repository holds all the code written and run for the project "Predicting Cancer Prognosis and Risk with Epigenetic Germline Variants Underlying Topological Associated Domains"

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Epigenome_TADs.ipynb		Epigenome_TADs.ipynb
Epistasis.ipynb		Epistasis.ipynb
Germline Distribution .ipynb		Germline Distribution .ipynb
MeQTL-TAD-Code.ipynb		MeQTL-TAD-Code.ipynb
Promoter Methylation.ipynb		Promoter Methylation.ipynb
TAD Common Domains.ipynb		TAD Common Domains.ipynb
TAD_Clustering_meQTLs.ipynb		TAD_Clustering_meQTLs.ipynb
TAD_DNA_Methylation_meQTLs.ipynb		TAD_DNA_Methylation_meQTLs.ipynb
TAD_activity_meQTL_drivergenes.ipynb		TAD_activity_meQTL_drivergenes.ipynb
TAD_pathogenic_variants.ipynb		TAD_pathogenic_variants.ipynb
cancer_driver_meQTL.ipynb		cancer_driver_meQTL.ipynb
clumped_meqtl_randomization.ipynb		clumped_meqtl_randomization.ipynb
functional_SNPs_TADs.ipynb		functional_SNPs_TADs.ipynb
meqtl_beta_regression.ipynb		meqtl_beta_regression.ipynb
meqtl_kaplan_meier.ipynb		meqtl_kaplan_meier.ipynb
modeling_heatmap.ipynb		modeling_heatmap.ipynb
quantile_PRS.ipynb		quantile_PRS.ipynb
risk_datasets.ipynb		risk_datasets.ipynb
risk_heatmap.ipynb		risk_heatmap.ipynb
risk_score_snps.ipynb		risk_score_snps.ipynb
survival_transcription.ipynb		survival_transcription.ipynb

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This repository holds all the code written and run for the project "Predicting Cancer Prognosis and Risk with Epigenetic Germline Variants Underlying Topological Associated Domains"

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