fix: readthedocs build

.readthedocs.yml

@@ -11,6 +11,11 @@ build:
     python: "3.11"
   jobs:
     post_install:
+      - sudo apt-get update
+      - sudo apt-get install -y software-properties-common
+      - sudo apt-get update -y
+      - sudo apt-get install -y openjdk-11-jre
+      - export JAVA_HOME=/usr/lib/jvm/java-11-openjdk-amd64/
       - python -m pip install --no-deps -r docs/extra-requirements.txt
 
 # Build documentation in the "docs/" directory with Sphinx

app/modules/all_descriptors.py

@@ -287,12 +287,11 @@ def get_tanimoto_similarity(smileslist: str, toolkit: str = "cdk") -> list:
     Args:
         smileslist (str): A comma-separated list of SMILES strings.
         toolkit (str, optional): The toolkit to use for calculating similarity.
-            Can be "cdk" (Chemistry Development Kit) or "rdkit" (RDKit).
-            Defaults to "cdk".
+            Can be "cdk" (Chemistry Development Kit) or "rdkit" (RDKit).Defaults to "cdk".
 
     Returns:
         list: A matrix containing Tanimoto similarity scores.
-            Rows and columns correspond to SMILES strings in the input list.
+        Rows and columns correspond to SMILES strings in the input list.
 
     Raises:
         ValueError: If an unsupported toolkit is provided.

docs/tools.rst

@@ -10,7 +10,7 @@ app.modules.tools.surge module
    :show-inheritance:
 
 app.modules.tools.sugar_removal module
--------------------------------------
+--------------------------------------
 
 .. automodule:: app.modules.tools.sugar_removal
    :members: