NOLAN

TENET(Transfer Entropy-based causal gene NETwork) refined

Original

Please visit the orignal TENET Github. Also take a look at the original TENET Paper.

Improvements

• refined and packaged as python3 module for improved usability
• explicit parallelization by python multiprocessing, does not depend on openmpi
• utilizes shared memory to avoid overhead from collecting results from threads
• core java code remains unchanged to guarentee same results

Dependencies

• Python >= 3.10
• JPype >= 1.4.0
• numpy
• pandas
• tqdm

Installation

This module is not on pypi.

git clone --recurse-submodules https://github.com/Stfort52/NOLAN.git

Reference

Please refer to the repository wiki.