chore: release 0.39.0 (#438)

* chore(release): add release 0.39.0 Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * chore(examples/substra_core): unpin substratools lib version in dockerfiles Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * feat: add first version release notes Signed-off-by: Guilhem Barthés <guilhem.barthes@owkin.com> * docs(releases): add more release notes Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * fix(docs/examples): remove scikit-learn from dockerfile dependencies Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * fix(docs/examples): revert constraint on pandas in dockerfile dependencies Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * style(release): fix style issue on release notes Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> * [auto] update changelog Signed-off-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> --------- Signed-off-by: Thibault Camalon <135698225+thbcmlowk@users.noreply.github.com> Signed-off-by: Guilhem Barthés <guilhem.barthes@owkin.com> Signed-off-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Guilhem Barthés <guilhem.barthes@owkin.com> Co-authored-by: substra-bot[bot] <substra-bot[bot]@users.noreply.github.com>
Substra · Sep 16, 2024 · a0327ed · a0327ed
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 <!-- towncrier release notes start -->
 
+## [0.39.0](https://github.com/Substra/substra-documentation/releases/tag/0.39.0) - 2024-09-13
+
+### Added
+
+- Documentation on Kubernetes volumes. ([#424](https://github.com/Substra/substra-documentation/pull/424))
+- Documentation on network policies. ([#425](https://github.com/Substra/substra-documentation/pull/425))
+- How-to on `nodeSelector`, `affinity` and `taints` for the compute function ([#429](https://github.com/Substra/substra-documentation/pull/429))
+- Support Python 3.12. ([#430](https://github.com/Substra/substra-documentation/pull/430))
+
+### Changed
+
+- Apply `use_gpu` to `diasble_gpu` renaming on SubstraFL in all `TorchAlgo` ([#436](https://github.com/Substra/substra-documentation/pull/436))
+
+### Fixed
+
+- Ignore `IntEnum` in API reference documentation. ([#427](https://github.com/Substra/substra-documentation/pull/427))
+- Bump pytorch version to 2.2.1 in tests. ([#431](https://github.com/Substra/substra-documentation/pull/431))
+
+
 ## [0.38.0](https://github.com/Substra/substra-documentation/releases/tag/0.38.0) - 2024-06-03
 
 ### Added

diff --git a/changes/424.added b/changes/424.added
diff --git a/changes/425.added b/changes/425.added
diff --git a/changes/427.fixed b/changes/427.fixed
diff --git a/changes/429.added b/changes/429.added
diff --git a/changes/430.added b/changes/430.added
diff --git a/changes/431.fixed b/changes/431.fixed
diff --git a/changes/436.changed b/changes/436.changed
diff --git a/docs/source/additional/release.rst b/docs/source/additional/release.rst
@@ -31,6 +31,49 @@ This is an overview of the main changes, please have a look at the changelog of
 - `backend changelog <https://github.com/Substra/substra-backend/blob/main/CHANGELOG.md>`__
 - `orchestrator changelog <https://github.com/Substra/orchestrator/blob/main/CHANGELOG.md>`__
 
+Substra 0.39.0 --- 2024-09-13
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+**All**
+
+.. warning::
+
+    **This will the last version offering support for Python 3.9!**
+
+- We are now supporting Python 3.12
+
+- Please make sure your workflows relies on Python 3.10 at least from now on
+
+.. warning::
+
+    **It's not longer possible to generate never-expiring tokens via the web application.**
+
+- BREAKING: User tokens previously generated via the web application without an expiry date will expire during an upgrade towards 0.39.0
+
+- Improved handling of errors without logs
+
+- Introducing function profiling, available on linked tasks via the web application
+
+**SubstraFL**
+
+- **BREAKING**: renamed argument ``use_gpu`` to ``disable_gpu`` in ``TorchAlgo``
+
+- Enforced ``substrafl`` compatibility with GPU workflows
+
+**Backend**
+
+- Reduced build time by downloading functions only if not present on the current backend
+
+**Operations**
+
+- Enabled (on-demand) GPU compatibility. The main visible change is the introduction of the new fields in substra-backend charts, allowing the use of node pools spawned on-demand with specific capabilities (like GPUs):
+    - ``worker.computePod.affinity``
+    - ``worker.computePod.nodeSelector``
+    - ``worker.computePod.tolerations``
+
+- Allow to use pre-defined (instead of packaged) secrets in substra-backend (in particular ``accountOperator``)
+
+
 Substra 0.38.0 --- 2024-06-13
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 

diff --git a/docs/source/additional/releases.yaml b/docs/source/additional/releases.yaml
@@ -8,6 +8,38 @@ components: # for table headers
   - substra-tests
 
 releases:
+  - version: 0.39.0
+    components:
+      substrafl:
+        version: 0.47.0
+        link: https://github.com/Substra/substrafl/releases/tag/0.47.0
+      substra:
+        version: 0.54.0
+        link: https://github.com/Substra/substra/releases/tag/0.54.0
+      substra-tools:
+        version: 0.22.0
+        link: https://github.com/Substra/substra-tools/releases/tag/0.22.0
+      substra-backend:
+        version: 0.48.0
+        link: https://github.com/Substra/substra-backend/releases/tag/0.48.0
+        helm:
+          version: 26.9.1
+          link: https://artifacthub.io/packages/helm/substra/substra-backend/26.9.1
+      orchestrator:
+        version: 0.43.0
+        link: https://github.com/Substra/orchestrator/releases/tag/0.43.0
+        helm:
+          version: 8.7.6
+          link: https://artifacthub.io/packages/helm/substra/orchestrator/8.7.6
+      substra-frontend:
+        version: 0.52.0
+        link: https://github.com/Substra/substra-frontend/releases/tag/0.52.0
+        helm:
+          version: 1.2.2
+          link: https://artifacthub.io/packages/helm/substra/substra-frontend/1.2.2
+      substra-tests:
+        version: 0.52.0
+        link: https://github.com/Substra/substra-tests/releases/tag/0.52.0
   - version: 0.38.0
     components:
       substrafl:

diff --git a/docs/source/examples/substra_core/diabetes_example/assets/functions/aggregation/Dockerfile b/docs/source/examples/substra_core/diabetes_example/assets/functions/aggregation/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.9-slim
 
 # install dependencies
-RUN pip3 install 'pandas<2.0' 'numpy<2.0' 'substratools==0.22.0a2'
+RUN pip3 install 'pandas<2.0' 'numpy<2.0' substratools
 
 # add your algorithm script to docker image
 ADD federated_analytics_functions.py .

diff --git a/...s/substra_core/diabetes_example/assets/functions/local_first_order_computation/Dockerfile b/...s/substra_core/diabetes_example/assets/functions/local_first_order_computation/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.9-slim
 
 # install dependencies
-RUN pip3 install 'pandas<2.0' 'numpy<2.0' 'substratools==0.22.0a2'
+RUN pip3 install 'pandas<2.0' 'numpy<2.0' substratools
 
 # add your algorithm script to docker image
 ADD federated_analytics_functions.py .

diff --git a/.../substra_core/diabetes_example/assets/functions/local_second_order_computation/Dockerfile b/.../substra_core/diabetes_example/assets/functions/local_second_order_computation/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.9-slim
 
 # install dependencies
-RUN pip3 install 'pandas<2.0' 'numpy<2.0' 'substratools==0.22.0a2'
+RUN pip3 install 'pandas<2.0' 'numpy<2.0' substratools
 
 # add your algorithm script to docker image
 ADD federated_analytics_functions.py .

diff --git a/...ce/examples/substra_core/titanic_example/assets/function_random_forest/predict/Dockerfile b/...ce/examples/substra_core/titanic_example/assets/function_random_forest/predict/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.12-slim
 
 # install dependencies
-RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' 'substratools==0.22.0a2'
+RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' substratools
 
 # add your function script to docker image
 ADD titanic_function_rf.py .

diff --git a/...urce/examples/substra_core/titanic_example/assets/function_random_forest/train/Dockerfile b/...urce/examples/substra_core/titanic_example/assets/function_random_forest/train/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.12-slim
 
 # install dependencies
-RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' 'substratools==0.22.0a2'
+RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' substratools
 
 # add your function script to docker image
 ADD titanic_function_rf.py .

diff --git a/docs/source/examples/substra_core/titanic_example/assets/metric/Dockerfile b/docs/source/examples/substra_core/titanic_example/assets/metric/Dockerfile
@@ -2,7 +2,7 @@
 FROM python:3.12-slim
 
 # install dependencies
-RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' 'substratools==0.22.0a2'
+RUN pip3 install pandas 'numpy<2.0' 'scikit-learn==1.5.0' substratools
 
 # add your metrics script to docker image
 ADD titanic_metrics.py .