multiplexed-scrna

Analysis of Multiplexed droplet scRNA-seq data from Kang et al. Nat Biotechnol 2018.
Multiplexed dscRNA-seq for characterizing the cell-type specificity and inter-individual variability of response to IFN-β in lupus patients.
GEO GSE 96583

Analysis steps include the following:

1. Initialization
2. Data download
3. Data ingestion and filtering
4. Combining cell matrices across conditions
5. Integrating cell matrices across conditions and samples
6. Cleanup