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@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

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  1. Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 101 44

  2. yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 98 46

  3. RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 105 54

  4. GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 67 51

  5. DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 139 55

Repositories

Showing 10 of 103 repositories
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 101 CC-BY-4.0 44 108 22 Updated Dec 31, 2024
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 105 54 7 0 Updated Dec 22, 2024
  • sysbio.se Public

    The sysbio.se source code

    CSS 0 MIT 2 1 0 Updated Dec 3, 2024
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 98 CC-BY-4.0 46 29 (6 issues need help) 1 Updated Nov 25, 2024
  • CellFactory-ecYeastGEM Public

    Code and data for in silico strain design for enhanced production of +100 typical bio-products with yeast as a cell-factory. Predictions are based on the ecYeastGEM model avaiable at ecModels.

    MATLAB 0 CC-BY-4.0 2 6 1 Updated Nov 16, 2024
  • ecFactory Public

    A constraint-based method for prediction of metabolic engineering targets using ecModels of metabolism

    MATLAB 8 GPL-3.0 4 1 1 Updated Nov 15, 2024
  • sint-GEM Public

    Genome-scale metabolic model of Candida intermedia

    MATLAB 0 GPL-3.0 0 7 0 Updated Nov 14, 2024
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 67 MIT 51 11 2 Updated Oct 19, 2024
  • GAGome-BCa Public
    HTML 0 0 0 0 Updated Aug 28, 2024
  • Yarrowia_Multifactor Public

    Data and scripts used for the RNA-seq analysis of Yarrowia lipolytica (fat-free strain and urea utilisation)

    MATLAB 1 MIT 1 0 0 Updated Jun 24, 2024

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