- Input qtls.csv file must be specified in the nextflow.config file and have the columns RSID, CHR and POS for each SNP you would like to examine
- RSID must match the format used in the BGEN files for the cohort-of-interest
- CHR must be just an integer values, without the prefix
chr
- POS must also be an integer value and must match the corresponding BGEN files and genome assembly chosen
-
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