remove multiproc that crashes vmem

TARGENE · May 17, 2023 · bb26bf2 · bb26bf2
1 parent aec53f3
commit bb26bf2
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Showing 2 changed files with 1 addition and 4 deletions.
diff --git a/estimators/glmnet.interaction.yaml b/estimators/glmnet.interaction.yaml
@@ -2,18 +2,15 @@
 Q_continuous:
   model: RestrictedInteractionGLMNetRegressor
   nfolds: 3
-  parallel: true
   order: 2
 
 # For the estimation of E[Y|W, T]: binary target
 Q_binary:
   model: RestrictedInteractionGLMNetClassifier
   nfolds: 3
-  parallel: true
   order: 2
 
 # For the estimation of p(T| W)
 G:
   model: GLMNetClassifier
-  parallel: true
   nfolds: 3
diff --git a/modules/tmle.nf b/modules/tmle.nf
@@ -39,7 +39,7 @@ process TMLE {
         hdf5option = params.SAVE_IC == true ? "--hdf5-out=${hdf5out}" : ""
         """
         TEMPD=\$(mktemp -d)
-        JULIA_DEPOT_PATH=\$TEMPD:/opt julia --project=/TargetedEstimation.jl --procs=${task.cpus} --threads=${task.cpus} --startup-file=no /TargetedEstimation.jl/scripts/tmle.jl \
+        JULIA_DEPOT_PATH=\$TEMPD:/opt julia --project=/TargetedEstimation.jl --threads=${task.cpus} --startup-file=no /TargetedEstimation.jl/scripts/tmle.jl \
         $data $parameterfile $estimatorfile $csvout \
         $hdf5option \
         --chunksize=100 \