v0.6.0

Adds:

• New estimator file format
• Control over cross validation for GLMNet

v0.5.4

fix test

v0.5.3

remove multiproc that crashes vmem

v0.5.2

Merge pull request #71 from TARGENE/add_multi_process

add multiprocessing for glmnet

v0.5.1

fix main

v0.5.0

Breaking: Yes

New:

• New parameter file format (breaking)
• Automatic p-value adjustment by trait
• Negative control pipeline

v0.4.0

New features:

• FROM_ACTORS mode:

  1. Will now also compute the Average treatment effect with fixed treatments other than the bQTL. This will hopefully provide the directionality of effect to the current interaction results!
  2. Can support both string ("AA", "AC", "CC") and integer (0,1,2) representation of alleles vias the GENOTYPES_AS_INT argument (default to false)

• We now have working tests and CI at the pipeline level!

• All internal releases now follow semantic versioning!

• The new SAVE_IC argument (default to true) allows to save influence curves with p-value under 'SIEVE_PVAL' independently of whether you want to compute the sieve estimates (NB_VAR_ESTIMATORS > 0).

v0.3.7

add possibility to fastforward columns

v0.3.6

up docs

v0.3.5

Merge branch 'main' of github.com:TARGENE/targene-pipeline into main