v1.2.14

What's Changed

• updates raxml tree path by @robert-ervin-jones in #104
• Add .circleci/config.yml by @robert-ervin-jones in #115
• fix typo matrix_constructor.smk by @giacomomutti in #114
• Integrates nucl matrix contsructor by @robert-ervin-jones in #118
• add leaf rename utility by @robert-ervin-jones in #117
• Fix the bug in issue#120 "NameError: name 'metadata' is not defined" by @shuiyujinlan in #121
• added lock by @DavidZihala in #123

New Contributors

• @giacomomutti made their first contribution in #114
• @shuiyujinlan made their first contribution in #121
• @DavidZihala made their first contribution in #123

Full Changelog: v1.2.13...v1.2.14

v1.2.13

What's Changed

• Updates raxml ng by @robert-ervin-jones in #103

Full Changelog: v1.2.12...v1.2.13

v1.2.12

What's Changed

• updates forest_local to reflect change to raxml-ng by @robert-ervin-jones in #92
• updates logic behind sanity check by @robert-ervin-jones in #94
• updates matrix_constructor_stats.tsv and adds occupancy.tsv by @robert-ervin-jones in #96
• adds sht_include option to informant by @robert-ervin-jones in #97

Full Changelog: v1.2.11...v1.2.12

v1.2.11

What's Changed

• updates raxml command to only use one thread by @robert-ervin-jones in #90

Full Changelog: v1.2.10...v1.2.11

v1.2.10

What's Changed

• 84 forestpy produces an empty directory by @robert-ervin-jones in #85

Full Changelog: v1.2.9...v1.2.10

v1.2.9

What's Changed

• Fix select taxa chimera bug by @robert-ervin-jones in #83

Full Changelog: v1.2.8...v1.2.9

v1.2.8

What's Changed

• Nucl matrix utility by @robert-ervin-jones in #76
• changes raxml threads by @robert-ervin-jones in #79
• updates raxml rule to use raxml-ng by @robert-ervin-jones in #80

Full Changelog: v1.2.7...v1.2.8

v1.2.7

What's Changed

• adds trimal gt param to matrix_constructor.py by @robert-ervin-jones in #75

Full Changelog: v1.2.6...v1.2.7

v1.2.6

What's Changed

• fixes aa_recoder by @robert-ervin-jones in #70
• changes sgt to homolog in informant by @robert-ervin-jones in #71
• adds path to matrix_constructor.smk to setup.py by @robert-ervin-jones in #73
• bumps version to 1.2.6 by @robert-ervin-jones in #74

Full Changelog: v1.2.5...v1.2.6

v1.2.5

What's Changed

• fixes conda env paths by @robert-ervin-jones in #64
• reworks backup strategy by @robert-ervin-jones in #67
• fixes paths by @robert-ervin-jones in #66

Full Changelog: v1.2.4...v1.2.5