Automatic-installation #472
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| schedule: | |
| - cron: '0 0 * * *' | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: Automatic-installation | |
| jobs: | |
| Automatic-installation: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| KMP_DUPLICATE_LIB_OK: TRUE | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: TinyTex for non Windows | |
| if: runner.os != 'Windows' | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| env: | |
| TINYTEX_INSTALLER: TinyTeX | |
| #TINYTEX_VERSION: '2023.03' | |
| - name: TinyTex for Windows | |
| if: runner.os == 'Windows' | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| env: | |
| TINYTEX_INSTALLER: TinyTeX | |
| TINYTEX_VERSION: '2023.03' | |
| - name: TinyTex2 for Windows | |
| if: runner.os == 'Windows' | |
| uses: teatimeguest/setup-texlive-action@v2 | |
| - name: Install makeindex | |
| run: | | |
| tlmgr install makeindex | |
| - name: Query dependencies | |
| run: | | |
| setwd("sjSDM") | |
| install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") | |
| saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), "../.github/r-depends.rds") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} | |
| restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| setwd("sjSDM") | |
| pak::local_system_requirements(execute = TRUE) | |
| pak::pkg_system_requirements("rcmdcheck", execute = TRUE) | |
| shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| setwd("sjSDM") | |
| pak::local_install_dev_deps(upgrade = TRUE) | |
| pak::pkg_install("devtools") | |
| shell: Rscript {0} | |
| - name: Install Pkg | |
| run: | | |
| cd sjSDM | |
| Rscript -e "pak::local_install()" | |
| Rscript -e "pak::pkg_install('rstudio/reticulate')" | |
| Rscript -e "sjSDM::install_sjSDM(version='cpu')" | |
| - name: Run-sjSDM | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| CI: true | |
| run: | | |
| setwd("sjSDM") | |
| options(crayon.enabled = TRUE) | |
| library(sjSDM) | |
| com = simulate_SDM(env = 3L, species = 7L, sites = 10L) | |
| model = sjSDM(Y = com$response,env = com$env_weights, iter = 2L) | |
| shell: Rscript {0} | |
| - name: testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results | |
| path: check |