Plink integration for tranSMART
Add the following entry into "inlinePlugins":
'transmart-gwas-plink': 'transmart-gwas-plink'
and the following entry into "InternalDependenciesFilter":
compile ":transmart-gwas-plink:$transmartVersion"
in file "DependencyManagement.groovy"
Add the following lines into Config.groovy:
grails.plugin.transmartGwasPlink.enabled=true grails.plugin.transmartGwasPlink.plinkPath='/usr/local/bin/plink'
(the value of the last parameter depends on where you've installed plink binary).
See wiki: https://github.com/ThomsonReuters-LSPS/transmart-gwas-plink/wiki