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Build TileDB-VCF-Py on Windows without conda #766

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Build TileDB-VCF-Py on Windows without conda #766

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34 changes: 15 additions & 19 deletions .github/workflows/windows.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,31 +18,27 @@ on:
- 'ci/gha-win-env.yml'
- 'libtiledbvcf/**'
workflow_dispatch:
defaults:
run:
shell: cmd /C CALL {0}
jobs:
build:
runs-on: windows-2022
steps:
- uses: actions/checkout@v4
- name: Install conda env
uses: mamba-org/setup-micromamba@v1
with:
environment-file: ci/gha-win-env.yml
cache-environment: true
init-shell: cmd.exe
condarc: |
channels:
- conda-forge
- tiledb
channel_priority: strict
- name: Build libtiledbvcf
run: cmd /C CALL ci\build-libtiledbvcf.bat
- name: libtiledbvcf version
run: tiledbvcf.exe version
- name: Build tiledbvcf-py
run: cmd /C CALL ci\build-tiledbvcf-py.bat
fetch-depth: 0 # fetch everything for python setuptools_scm
- name: Build and install libtiledbvcf
run: |
cmake -S libtiledbvcf -B libtiledbvcf\build
cmake --build libtiledbvcf\build -j2
cmake --build libtiledbvcf\build -j2 --target install-libtiledbvcf
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Install tiledbvcf-py
run: |
set TileDB_DIR=.\libtiledbvcf\build\externals\install\lib\cmake\TileDB\
cd apis\python
python -m pip install -v .[test,dev]
- name: tiledbvcf-py version
run: python -c "import tiledbvcf; print(tiledbvcf.version)"
- name: Test
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4 changes: 2 additions & 2 deletions libtiledbvcf/cmake/Modules/FindHTSlib.cmake
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Original file line number Diff line number Diff line change
Expand Up @@ -91,11 +91,11 @@ if (NOT HTSLIB_FOUND)
message("CMD_EXE_PATH is ${CMD_EXE_PATH}")
string(REPLACE "/" "\\\\" CMD_EXE_PATH_FWD_SLASH "${CMD_EXE_PATH}")
message("CMD_EXE_PATH_FWD_SLASH is ${CMD_EXE_PATH_FWD_SLASH}")

ExternalProject_Add(ep_htslib
PREFIX "externals"
URL https://github.com/TileDB-Inc/m2w64-htslib-build/releases/download/1.20-0/m2w64-htslib-1.20-0.tar.gz
URL_HASH SHA1=da39a3ee5e6b4b0d3255bfef95601890afd80709
URL_HASH SHA1=6f3e208ccc0262f89dcdf344d96e40696a5db133
UPDATE_COMMAND ""
CONFIGURE_COMMAND ""
BUILD_COMMAND ""
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