Code

✨ NEW: DFBR for Registering Images#510

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shaneahmed merged 207 commits intodevelopTissueImageAnalytics/tiatoolbox:developfrom dev-DFBRTissueImageAnalytics/tiatoolbox:dev-DFBRCopy head branch name to clipboardDec 9, 2022

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Commits on Jul 30, 2022

• Feature extraction for DFBR.

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• Feature extraction for DFBR.

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Commits on Jul 31, 2022

• Update tiatoolbox/tools/registration/wsi_registration.py

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Commits on Aug 1, 2022

• Feature extraction for DFBR.

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• - tests added to conftest and removed from test_wsi_registration.py

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• - removed fixture tests from conftest and placed them to test_wsi_registration.py, due to an error 'fixture not found'.

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Commits on Aug 10, 2022

• Update tiatoolbox/tools/registration/wsi_registration.py

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Commits on Aug 12, 2022

• DEV: Replaced png images with jpeg images for test.

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• DEV: Feature matching functions added.

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• Merge branch 'develop' into dev-feature_matching_DFBR

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• DEV: Compute transformation matrix.

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Commits on Aug 19, 2022

• Merge branch 'develop' into dev-feature_matching_DFBR

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Commits on Aug 22, 2022

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• Add typehints, update docstrings

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• Merge branch 'develop' into dev-feature_matching_DFBR

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Commits on Sep 9, 2022

• Merge branch 'develop' into dev-feature_matching_DFBR

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• DEV: Add register method.

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Commits on Sep 10, 2022

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• DEV: Remove matching points outside the tissue boundary.

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Commits on Sep 11, 2022

• DEV: Estimate transformation in a blockwise manner using DFBR.

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• Replace range with enumerate in for loop.

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Commits on Sep 12, 2022

• Merge branch 'develop' into dev-DFBRegistration

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Commits on Sep 16, 2022

• Merge branch 'develop' into dev-DFBRegistration

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Commits on Sep 20, 2022

• Fix bug.

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Commits on Oct 3, 2022

• Remove tests from extract_features and add them to register

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Commits on Oct 4, 2022

• Add pre-alignment inside register function

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• Merge remote-tracking branch 'origin/dev-DFBRegistration' into dev-DFBRegistration

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Commits on Oct 6, 2022

• - Rewrite find_points_inside_boundary function with PatchExtractor.filter_coordinates_fast

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• - Split test functions into separate unit tests.

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• - Notebook for WSI registration.

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