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Townsend-Lab-Yale · Dec 5, 2023 · 49b5c37 · 49b5c37
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Showing 104 changed files with 257 additions and 154 deletions.
diff --git a/_pkgdown.yml b/_pkgdown.yml
@@ -25,6 +25,7 @@ reference:
   - get_TCGA_project_MAF
   - vcfs_to_maf_table
   - make_PathScore_input
+  - get_PathScore_coding_regions
 - title: Load and manage variants
   contents:
   - load_maf

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/MAF_filtering_tips.html b/docs/articles/MAF_filtering_tips.html
diff --git a/docs/articles/cancereffectsizeR.html b/docs/articles/cancereffectsizeR.html
diff --git a/docs/articles/cosmic_cancer_type_note.html b/docs/articles/cosmic_cancer_type_note.html
diff --git a/docs/articles/create_custom_covariates.html b/docs/articles/create_custom_covariates.html
diff --git a/docs/articles/custom_refset_instructions.html b/docs/articles/custom_refset_instructions.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
   cosmic_cancer_type_note: cosmic_cancer_type_note.html
   create_custom_covariates: create_custom_covariates.html
   custom_refset_instructions: custom_refset_instructions.html
-last_built: 2023-11-15T21:46Z
+last_built: 2023-12-05T16:06Z
 urls:
   reference: https://townsend-lab-yale.github.io/cancereffectsizeR/reference
   article: https://townsend-lab-yale.github.io/cancereffectsizeR/articles

diff --git a/docs/reference/CESAnalysis.html b/docs/reference/CESAnalysis.html