Modularising Bayesian Network (Experimental)

[naseweisssss]

No description provided.

[coveralls]

Pull Request Test Coverage Report for Build 13005989660

Details

• 0 of 113 (0.0%) changed or added relevant lines in 3 files are covered.
• No unchanged relevant lines lost coverage.
• Overall coverage increased (+0.9%) to 74.278%

---

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
src/experimental/ProbabilisticGraphicalModels/bayesian_network.jl	0	2	0.0%
src/experimental/ProbabilisticGraphicalModels/conditioning.jl	0	38	0.0%
src/experimental/ProbabilisticGraphicalModels/functions.jl	0	73	0.0%

Totals
Change from base Build 12334000793:	0.9%
Covered Lines:	1441
Relevant Lines:	1940

---

💛 - Coveralls

[sunxd3]

Other than fixing the formatting (extra line at the end of the file), looks good

[naseweisssss]

Other than fixing the formatting (extra line at the end of the file), looks good

Removed

[github-actions]

Benchmark results on macOS (aarch64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.1 to /Users/runner/.bridgestan/bridgestan-2.6.1
Done!
Model dogs produces error: ErrorException("log_density() failed with unknown exception\n")

Model	Parameter Count	Data Count	Stan Density Time (µs)	Stan Density Gradient Time (µs)	JuliaBUGS Density Time with Graph Walk (µs)	JuliaBUGS Density Gradient Time with ReverseDiff.jl(compiled tape) (µs)
rats	65	150	4.97917	7.05567	80.792	305.583
pumps	12	10	0.856194	1.09225	10.042	22.0
dogs	2	720	NA	NA	140.708	305.895
seeds	26	21	1.9	2.316	23.0	61.167
surgical_realistic	14	12	1.185	1.41291	11.396	27.125
magnesium	108	96	9.91667	10.7915	126.542	205.875
salm	22	18	3.33789	3.98214	17.875	42.041
equiv	15	20	3.52986	3.95243	15.5	48.459
dyes	9	30	1.50442	1.6745	10.1045	45.708
stacks	6	21	1.24418	1.61364	18.0	44.75
epil	303	236	32.292	35.334	195.084	637.209
blockers	47	44	2.63636	2.79167	45.708	85.334
oxford	244	240	11.5835	13.6875	262.0	526.75
lsat	1006	5000	98.834	134.334	1344.71	3478.29
bones	33	422	75.042	91.791	333.5	383.375
mice	20	65	6.6665	8.06933	21.625	87.667
kidney	64	58	8.63867	11.646	65.708	175.0
leuk	18	714	16.416	22.041	269.041	494.583
leukfr	40	714	22.709	28.875	275.812	686.167

Benchmark results on Ubuntu (x64)

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.6.1 to /home/runner/.bridgestan/bridgestan-2.6.1
Done!
Model dogs produces error: ErrorException("log_density() failed with exception: Exception: bernoulli_lpmf: Probability parameter is inf, but must be in the interval [0, 1] (in '/home/runner/work/JuliaBUGS.jl/JuliaBUGS.jl/benchmark/stan/bugs_examples/vol1/dogs/dogs.stan', line 37, column 6 to line 38, column 62)\n")

Model	Parameter Count	Data Count	Stan Density Time (µs)	Stan Density Gradient Time (µs)	JuliaBUGS Density Time with Graph Walk (µs)	JuliaBUGS Density Gradient Time with ReverseDiff.jl(compiled tape) (µs)
rats	65	150	5.2058	7.47067	68.0575	89.888
pumps	12	10	0.944323	1.12404	11.867	6.4445
dogs	2	720	NA	NA	168.917	147.727
seeds	26	21	1.93427	2.43208	28.614	24.5705
surgical_realistic	14	12	1.27413	1.44525	15.87	8.53267
magnesium	108	96	10.545	12.1125	142.878	117.279
salm	22	18	2.26192	2.7171	21.761	12.594
equiv	15	20	2.53745	3.31875	19.987	16.28
dyes	9	30	0.981167	1.15215	12.3135	13.0345
stacks	6	21	1.04696	1.39262	23.594	15.89
epil	303	236	27.602	34.094	283.005	352.279
blockers	47	44	3.06911	3.46775	61.0045	34.875
oxford	244	240	13.9265	16.341	361.557	173.915
lsat	1006	5000	164.262	203.491	2004.49	1305.24
bones	33	422	72.886	89.628	427.269	189.925
mice	20	65	7.286	9.22733	28.944	38.161
kidney	64	58	11.041	16.751	68.659	72.566
leuk	18	714	21.931	28.182	249.226	224.35
leukfr	40	714	26.48	33.723	225.782	393.967