MarkDuplicates MAX_RECORDS_IN_RAM decreased to 50000

UCL-BLIC · Aug 1, 2018 · d341e32 · d341e32
1 parent 7d62b73
commit d341e32
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/main.nf b/main.nf
@@ -263,6 +263,7 @@ process MarkDuplicates {
   """
   gatk --java-options -Xmx${task.memory.toGiga()}g \
   MarkDuplicates \
+  --MAX_RECORDS_IN_RAM 50000 \
   --INPUT ${bam} \
   --METRICS_FILE ${bam}.metrics \
   --TMP_DIR . \