Add local Pylint rule ignore directives for E1130 false positives

pyproject.toml

@@ -95,7 +95,6 @@ disable = [
     "C",
     "W",
     "E0611", # no-name-in-module
-    "E1130", # bad operand type for unary ~
 ]
 
 

src/tlo/util.py

@@ -203,7 +203,7 @@ def unset(self, where, *elements: str, columns: Optional[Union[str, List[str]]]
             update. If set to ``None`` (the default) a ``column`` argument must have
             been specified when constructing the ``BitsetHandler`` object.
         """
-        self.df.loc[where, self._get_columns(columns)] &= ~self.element_repr(*elements)
+        self.df.loc[where, self._get_columns(columns)] &= ~self.element_repr(*elements)  # pylint: disable=E1130
 
     def clear(self, where, columns: Optional[Union[str, List[str]]] = None):
         """Clears all the bits for the specified rows.

tests/test_bladder_cancer.py

@@ -264,7 +264,7 @@ def test_check_progression_through_stages_is_happening(seed):
 
     # check that there are now some people in each of the later stages:
     df = sim.population.props
-    assert not pd.isnull(df.bc_status[~pd.isna(df.date_of_birth)]).any()
+    assert not pd.isnull(df.bc_status[~pd.isna(df.date_of_birth)]).any()  # pylint: disable=E1130
     assert (df.loc[df.is_alive & (df.age_years >= 15)].bc_status.value_counts().drop(index='none') > 0).all()
 
     # check that some people have died of bladder cancer
@@ -314,7 +314,7 @@ def test_that_there_is_no_treatment_without_the_hsi_running(seed):
     # check that there are now some people in each of the later stages:
     df = sim.population.props
     assert len(df.loc[df.is_alive & (df.bc_status != 'none')]) > 0
-    assert not pd.isnull(df.bc_status[~pd.isna(df.date_of_birth)]).any()
+    assert not pd.isnull(df.bc_status[~pd.isna(df.date_of_birth)]).any()  # pylint: disable=E1130
     assert (df.loc[df.is_alive].bc_status.value_counts().drop(index='none') > 0).all()
 
     # check that some people have died of bladder cancer

tests/test_breast_cancer.py

@@ -264,7 +264,7 @@ def test_check_progression_through_stages_is_happening(seed):
 
     # check that there are now some people in each of the later stages:
     df = sim.population.props
-    assert not pd.isnull(df.brc_status[~pd.isna(df.date_of_birth)]).any()
+    assert not pd.isnull(df.brc_status[~pd.isna(df.date_of_birth)]).any()  # pylint: disable=E1130
     # debugging on this line below and there are women alive with breast cancer so not sure why assert is not working
     # Create variable for the condition
     # condition = df.is_alive & (df.age_years >= 15) & (df.sex == 'F')