Merge pull request #34 from UMCUGenetics/hotfix/v2.1.2

Hotfix/v2.1.2 to dev
UMCUGenetics · Jun 18, 2024 · ca633e4 · ca633e4
2 parents af7164b + 5c5bb01
commit ca633e4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/ExonCov/SampleQC.nf b/ExonCov/SampleQC.nf
@@ -12,8 +12,8 @@ process SampleQC {
         path("${analysis_id}.ExonCovQC_check.out")
 
     script:
-        def samples = sample_ids.collect{"$it"}.join(" ")
-        def panels = indications.collect{"$it"}.join(" ")
+        def samples = sample_ids.collect{"$it"}.join(" -s ")
+        def panels = indications.collect{"$it"}.join(" -p ")
         """
         source ${params.exoncov_path}/venv/bin/activate
         flask --app ${params.exoncov_path}/ExonCov sample_qc \