Release v2.6.0 #106

rernst · 2017-04-06T12:21:51Z

Changes:

Implement Hartwig IAP 1.12 changes. Hartwig IAP 1.12 changes #99
New SOMATIC_REGEX_REF_CODE and SOMATIC_REGEX_TUMOR_CODE settings to make somatic sample parsing more versatile.
Add INS calling for DELLY. Add INS SV type to DELLY calling #101
Update bcftools to fix roh analysis. Update bcftools to 1.4 #103
Set output dir for Exoncov instead of using default. Hardcoded folder name in illumina_poststats.pm #84
Fix bug in makeKaryotype.R . makeKaryotype.R bug #96
Delly now checks final output. Delly creates done without checking final output #104

…ake tumor/ref parsing more versatile.

Hartwig IAP 1.12 changes

rernst and others added 13 commits March 7, 2017 11:17

Add SOMATIC_REGEX_REF_CODE and SOMATIC_REGEX_TUMOR_CODE settings to m…

8651000

…ake tumor/ref parsing more versatile.

Add INS calling for DELLY, fix #101

f18c52e

Somatic changes, #99

3343148

Freec changes, #99.

1f075b2

Change EXONCALLCOV track location

7865bf0

Merge branch 'develop' of github.com:CuppenResearch/IAP into develop

53a36f4

Merge pull request #102 from UMCUGenetics/hmf1.12

5404049

Hartwig IAP 1.12 changes

Update bcftools to fix roh analysis. Solves #103.

d472f86

Fix #84.

99800e4

Fix #96.

ef12025

Fix #104.

d364fbe

Add id from design to variant calls.

4c3e27b

Ini: Remove tab from EXONCALLCOV_MEM setting

8d30ad1

rernst merged commit 9340658 into master Apr 7, 2017

rernst deleted the release-v2.6.0 branch April 7, 2017 10:59

Provide feedback