SARS_CoV_2_Variants

This repository contains data analyzed for the manuscripts:

Rouchka EC, Chariker JH, Chung D. (2020) Phylogenetic and variant analysis of 1,040 SARS-CoV-2 genomes. Preprints 2020, 2020050396 (doi: 10.20944/preprints202005.0396.v1).
Rouchka EC, Chariker JH, Chung D. (2020) Variant analysis of 1,040 SARS-CoV-2 genomes. Under review.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
IDsByMonth.txt		IDsByMonth.txt
Kalign_results.zip		Kalign_results.zip
LD_Analysis.zip		LD_Analysis.zip
README.md		README.md
accessionList-allGenomes.txt		accessionList-allGenomes.txt
accessionToGeographicalLocation-Setof1043.txt		accessionToGeographicalLocation-Setof1043.txt
createTree.R		createTree.R
distanceMatrix-SetOf1043.txt		distanceMatrix-SetOf1043.txt
phylogeneticTree.nwk		phylogeneticTree.nwk
sequenceVariants_CUTOFF_0.01.ped		sequenceVariants_CUTOFF_0.01.ped

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