nnUNet_Colab.ipynb is the nnUNet model running on Colab. From data preparation to training to prediction, the resulting model parameters are mainly saved in the checkpoint_final.pth file
checkpoint_final.pth is the result of the version with the most epoches trained so far, which is about 80 epoches by 40%.
![image](https://private-user-images.githubusercontent.com/53364849/294752626-adfa0250-aa9a-49a5-8b45-a7c6b67b66c6.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.AnwxPtw9GjsZ74Oc1_6b2TR4kjueVUsW92MLnmBmWgI)
Radiomics-features.xlsx All features extracted under the first setting (refer to P ituitary_tumor.ipynb code)
Radiomics-features2.xlsx See P ituitary_tumor.ipynb code for all features extracted in the second setting.
![Screenshot 2024-01-07 at 6 46 13 PM](https://private-user-images.githubusercontent.com/53364849/294752698-baa06380-552e-4da3-9b4c-a49c24887474.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.hDl99LyGhKFDBOGdbJdfh1BS9XGBkiu2myJIzsALrXo)
![Screenshot 2024-01-07 at 6 47 23 PM](https://private-user-images.githubusercontent.com/53364849/294752746-ef18706e-d0df-4c13-81dd-905d49d779e0.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.q_y-Te-sFHNm1M0QoDwcZwaCwZ_lg7lTpQYvZ76vaKM)
TianTan Tools.exe executable file, integrates several methods of data transformation, easy to directly obtain suitable for nnUNet training database
tiantan.ico image used as logo
TianTan.py is the source file from which the exe document is generated
Pituitary_tumor.ipynb, which is the most important code of the entire project, including data processing, feature extraction, classifier design, etc. TianTan Tools is a part of the visualization code.
Pituitary_tumor.pdf, and Pituitary_tumor.ipynb is transferred to pdf
reference paper.pdf is a reference for feature extraction and classifier design in the first way
![tools](https://private-user-images.githubusercontent.com/53364849/294752414-bedef33d-ad55-495e-b153-9e673b435b55.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.u-szjzkpVo8bICxPUAyyhn2s5aOm1c2pwL_VLH5eGak)
This project is supported by Neurosurgery team, Beijing Tiantan Hospital.