neuPrint

A blueprint of the brain. A set of tools for loading and analyzing connectome data into a Neo4j database. Analyze and explore connectome data stored in Neo4j using the neuPrint ecosystem: neuPrintHTTP, neuPrintExplorer, Python API.

Requirements

• Neo4j version 3.5.3
• apoc version 3.5.0.1¹

Example data

• hemibrain (hemibrain v1.0) : from "A Connectome of the Adult Drosophila Central Brain" (C. Shan Xu, et al. 2020)

• mushroombody (mb6) : from "A connectome of a learning and memory center in the adult Drosophila brain" (Takemura, et al. 2017)

• medulla7column (fib25) : from "Synaptic circuits and their variations within different columns in the visual system of Drosophila" (Takemura, et al. 2015)

Download the Hemibrain Data Set

• The hemibrain dataset is available for download on Google Bucket or by using gsutil gs://hemibrain-release/neuprint/hemibrain_v1.0_neo4j_inputs.zip. Format of these files are csv and can be imported into neo4j to generate a neuPrint database.

Load mushroombody (mb6) connectome data into Neo4j

Instructions on how to create a neuPrint instance of the mushroombody(mb6).

Load your own connectome data into Neo4j using neuPrint

Coming Soon

neuPrint Property Graph Model

Coming Soon

neuPrint Custom Procedures and Functions

• Graph Update API