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Installation: WHOI HPC

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Sidney Batchelder edited this page Feb 2, 2022 · 2 revisions

Installation and Setup on HPC All installation commands are to be run from a terminal. <user> refers to your username (and password)

  1. ssh <user>@poseidon.whoi.edu
  2. cd $SCRATCH
  3. git clone https://github.com/WHOIGit/ifcb_classifier.git ifcbnn
  4. cd ifcbnn
  5. conda create -n ifcbnn --file requirements/pkgs.hpc.txt
    • If you get “conda: command not found”, the anaconda hpc Module may not be loaded. Do module load anaconda and try again.
    • You can ensure modules load when you login with module initadd anaconda
  6. conda activate ifcbnn
    • If you get prompted with "conda init <SHELL_NAME>" select bash for your shell-name. You will have to log out of poseidon (exit), log back in, and navigate back to this DIR install directory.
  7. pip install git+https://github.com/joefutrelle/pyifcb.git
  8. DONE! Your installation is ready to go. You can test that things were installed correctly by doing python neuston_net.py --help. The help screen/documentation should appear.
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