This is the Matlab code for generateing main figs in the following paper:

Single cell transcriptomics of human epidermis identifies basal stem cell transition states, S. Wang, M. Drummond, C.Guerrero-Juarez, E.Tarapore, A.MacLean, A. Stabell, S. Wu, G. Gutierrez, B. That, C. Benavente, Q. Nie & S. X. Atwood, Nature Communications, 2020.

• All the results are generated by applying SoptSC to the single-cell RNA-seq data, for detailed useage of SoptSC, please refer to https://github.com/WangShuxiong/SoptSC
• Some figures are generated using custermized code below

Data used for each figure is deposit under folder 'Data'

Code for generating each figure:

Main_Figures1_2.m (Main_Figure1_2.mlx), Main_Figure3.m (Main_Figure3.mlx), Main_Figure4.m (Main_Figure4.mlx), Main_Figure5.m (Main_Figure5.mlx) for more details.

Tutorials

• Code for main Figures 1 & 2
• Code for ming Figure 3
• Code for ming Figure 4
• Code for ming Figure 5

Please feel free to contact us if you have any question: shuxionw 'at' uci 'dot' edu