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@WhiteLab

WhiteLab

Utilities, workflows and structures used within the White Lab.

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  1. RiboSeq_pipeline RiboSeq_pipeline Public

    A pipeline to process RiboSeq fastqs

    Python 6 3

  2. alignment alignment Public

    DNAseq alignment pipelines for use on HPC systems.

    Python 1 1

  3. Bionimbus-LIMS Bionimbus-LIMS Public

    A cloud-based infrastructure for managing, analyzing and sharing genomics datasets.

    Python 1

  4. RNAseq RNAseq Public

    RNAseq pipeline

    Python 1 2

  5. PDC_scripts PDC_scripts Public

    Forked from jgrundstad/PDC_scripts

    Scripts for interacting with OpenStack

    Python 1

  6. PEC_RNAseq_Unified PEC_RNAseq_Unified Public

    Pipeline logic used for the PsychENCODE RNAseq Unified Analysis

    Python 1

Repositories

Showing 10 of 49 repositories
  • RiboSeq_pipeline Public

    A pipeline to process RiboSeq fastqs

    WhiteLab/RiboSeq_pipeline’s past year of commit activity
    Python 6 3 0 0 Updated Apr 28, 2020
  • FCC_NN Public

    Various scripts for NN prediction of enhancer region motifs

    WhiteLab/FCC_NN’s past year of commit activity
    Python 0 0 0 0 Updated Jun 20, 2019
  • TransferBuddy Public

    REST Sequence Data Transfer

    WhiteLab/TransferBuddy’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2018
  • Bubbs Public

    Various Lab Utilities

    WhiteLab/Bubbs’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Sep 7, 2018
  • alignment Public

    DNAseq alignment pipelines for use on HPC systems.

    WhiteLab/alignment’s past year of commit activity
    Python 1 1 2 0 Updated May 24, 2018
  • RNAseq Public

    RNAseq pipeline

    WhiteLab/RNAseq’s past year of commit activity
    Python 1 2 0 0 Updated Apr 19, 2018
  • variant_viewer_update_tools Public

    Plugin to upload variant reports into variant viewer

    WhiteLab/variant_viewer_update_tools’s past year of commit activity
    Python 0 1 0 0 Updated Apr 11, 2018
  • clustermap_tools Public

    Somewhat specialized python scripts to create unsupervised hierarchical clustering heat maps

    WhiteLab/clustermap_tools’s past year of commit activity
    Python 0 1 0 0 Updated Mar 29, 2018
  • crispr_donor_pipe Public Forked from migbro/crispr_donor_pipe
    WhiteLab/crispr_donor_pipe’s past year of commit activity
    Python 0 1 0 0 Updated Mar 22, 2018
  • mouse_filter Public Forked from jgrundstad/mouse_filter

    Filter mouse reads from a Human PDX derived .bam

    WhiteLab/mouse_filter’s past year of commit activity
    Python 0 2 0 0 Updated Mar 15, 2018
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