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1. XSQConverter XSQConverter Public

   Converts SOLID XSQ/HDF files to fastq or csfasta files.

   Java 3 3

2. mappingPipeLine mappingPipeLine Public

   mappingPipeLine

   JavaScript

3. ParseSVFromBACAlignment ParseSVFromBACAlignment Public

   Parse SV call's from BAC contigs aligned with bwa-mem to a reference genome.

   Java

4. CompareBacNgsSvCalls CompareBacNgsSvCalls Public

   CompareBacNgsSvCalls

   Java

5. PileUpToLowAverageQualBed PileUpToLowAverageQualBed Public

   PileUpToLowAverageQualBed

   Java

6. Keats Keats Public

   Keats is a Scala port of the Picard library of the Broad Institute of Harvard and MIT. The goal is to use the advanced language features of Scala to make the library easier to understand / use and …

   Java