Merge pull request #165 from XAITK/main #36
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# This is a basic workflow to help you get started with Actions | |
name: Unit Testing | |
# Controls when the action will run. | |
on: | |
# Triggers the workflow on push or pull request events but only for the master branch | |
push: | |
branches: | |
- master | |
- release | |
pull_request: | |
branches: | |
- master | |
- release | |
- update-to-v* | |
# Allows you to run this workflow manually from the Actions tab | |
workflow_dispatch: | |
defaults: | |
run: | |
shell: bash | |
# A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
# NOTE: Github actions does not support anchors apparently. Forgive duplication of job | |
# steps. | |
jobs: | |
pytest: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.9","3.10","3.11","3.12"] | |
# Extras for included, optional plugin support (space-separated lists) | |
opt-extra: [ | |
"", # no extras | |
"tools", | |
] | |
# We want all python versions tested even if one of them happens to fail | |
fail-fast: false | |
container: python:${{ matrix.python-version }} | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
- name: Install Git LFS | |
run: | | |
apt-get -qq update | |
apt-get -qq install -y git-lfs | |
shell: bash | |
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
lfs: true | |
# Cache local python environment artifacts for the current python version | |
# and poetry lockfile hash. | |
- uses: actions/cache@v4 | |
id: env-cache | |
with: | |
path: | | |
~/.cache | |
key: python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }}-${{ matrix.opt-extra }} | |
restore-keys: | | |
python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
- name: Setup Environment | |
uses: ./.github/actions/test-stage | |
with: | |
extras: "${{ matrix.opt-extra }}" | |
- name: Unit Testing | |
run: poetry run pytest | |
- name: CodeCov report submission | |
uses: codecov/codecov-action@v4 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
fail_ci_if_error: true | |
files: coverage.xml | |
flags: unittests | |
notebooks: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
notebook-file: [ | |
"atari_deepRL_saliency.ipynb", | |
"DRISE.ipynb", | |
"MNIST_scikit_saliency.ipynb", | |
"OcclusionSaliency.ipynb", | |
"Radial_Image_Perturbation.ipynb", | |
"SimilarityScoring.ipynb", | |
"SuperPixelSaliency.ipynb", | |
"VIAME_OcclusionSaliency.ipynb", | |
"SerializedDetectionSaliency.ipynb", | |
# Model comparison example is excluded due to computational complexity | |
#"ModelComparisonWithSaliency.ipynb", | |
] | |
# We want all python versions tested even if one of them happens to fail | |
fail-fast: false | |
# Just one python version, using our base supported version. | |
container: | |
image: python:3.9 | |
options: "--shm-size 2GB" | |
# Steps represent a sequence of tasks that will be executed as part of the job | |
steps: | |
- name: Install Git LFS | |
run: | | |
apt-get -qq update | |
apt-get -qq install -y git-lfs | |
shell: bash | |
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
- uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
lfs: true | |
# Cache local python environment artifacts for the current python version | |
# and poetry lockfile hash. | |
- uses: actions/cache@v2 | |
id: env-cache | |
with: | |
path: | | |
~/.cache | |
# Using a different key due to additional things the notebook | |
# examples ad-hoc install. | |
key: python-3.9-${{ hashFiles('poetry.lock') }}-Examples | |
restore-keys: | | |
python-3.9-${{ hashFiles('poetry.lock') }} | |
- name: Setup Environment | |
uses: ./.github/actions/test-stage | |
with: | |
extras: "tools example_deps" | |
- uses: actions/cache@v2 | |
id: notebook-data-cache | |
with: | |
path: | | |
~/.cache/ | |
examples/data/ | |
key: python-3.9-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }} | |
# pretty unique, no restore-keys. | |
- name: Run Notebook | |
run: | | |
cd examples | |
poetry run papermill \ | |
--progress-bar \ | |
-k python3 \ | |
--stdout-file - --stderr-file - \ | |
"${{ matrix.notebook-file }}" /dev/null |