Merge pull request #157 from XAITK/update-to-v0.9.0

Update to v0.9.0

.github/workflows/ci-example-notebooks.yml

@@ -43,7 +43,7 @@ jobs:
 
     # Just one python version, using our base supported version.
     container:
-      image: python:3.8
+      image: python:3.9
       options: "--shm-size 2GB"
 
     # Steps represent a sequence of tasks that will be executed as part of the job
@@ -72,9 +72,9 @@ jobs:
             ~/.local
           # Using a different key due to additional things the notebook
           # examples ad-hoc install.
-          key: python-3.8-${{ hashFiles('poetry.lock') }}-Examples
+          key: python-3.9-${{ hashFiles('poetry.lock') }}-Examples
           restore-keys: |
-            python-3.8-${{ hashFiles('poetry.lock') }}
+            python-3.9-${{ hashFiles('poetry.lock') }}
 
       - name: Setup Environment
         # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory
@@ -89,7 +89,7 @@ jobs:
           path: |
             ~/.cache/torch/
             examples/data/
-          key: python-3.8-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }}
+          key: python-3.9-${{ hashFiles('poetry.lock') }}-ExampleData-${{ matrix.notebook-file }}
           # pretty unique, no restore-keys.
 
       - name: Run Notebook

.github/workflows/ci-unittests.yml

@@ -28,7 +28,7 @@ defaults:
 jobs:
   lint:
     runs-on: ubuntu-latest
-    container: python:3.8
+    container: python:3.9
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - uses: actions/checkout@v4
@@ -45,7 +45,7 @@ jobs:
           path: |
             ~/.cache/pypoetry/virtualenvs/
             ~/.local
-          key: python-3.8-${{ hashFiles('poetry.lock') }}
+          key: python-3.9-${{ hashFiles('poetry.lock') }}
       - name: Setup Environment
         # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory
         uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master
@@ -54,7 +54,7 @@ jobs:
 
   typecheck:
     runs-on: ubuntu-latest
-    container: python:3.8
+    container: python:3.9
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - uses: actions/checkout@v4
@@ -71,7 +71,7 @@ jobs:
           path: |
             ~/.cache/pypoetry/virtualenvs/
             ~/.local
-          key: python-3.8-${{ hashFiles('poetry.lock') }}
+          key: python-3.9-${{ hashFiles('poetry.lock') }}
       - name: Setup Environment
         # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory
         uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master
@@ -82,7 +82,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.8","3.9","3.10","3.11","3.12"]
+        python-version: ["3.9","3.10","3.11","3.12"]
         # Extras for included, optional plugin support (space-separated lists)
         opt-extra: [
             "",  # no extras

.github/workflows/publish.yml

@@ -22,7 +22,7 @@ defaults:
 jobs:
   publish:
     runs-on: ubuntu-latest
-    container: python:3.8
+    container: python:3.9
     # This should only be run for tags on the "official" repository org.
     if: github.repository_owner == 'XAITK'
     steps:
@@ -41,7 +41,7 @@ jobs:
           path: |
             ~/.cache/pypoetry/virtualenvs/
             ~/.local
-          key: python-3.8-${{ hashFiles('poetry.lock') }}
+          key: python-3.9-${{ hashFiles('poetry.lock') }}
 
       - name: Setup Environment
         # Using non-relative path for correct behavior when used as a remote

.readthedocs.yaml

@@ -2,15 +2,20 @@ version: 2
 formats:
   - pdf
 build:
-  os: ubuntu-22.04
+  os: "ubuntu-22.04"
   tools:
-    python: "3.8"
-
-python:
-  install:
-    - requirements: docs/readthedocs-reqs.txt
-    - method: pip
-      path: .
+    python: "3.9"
+  jobs:
+    post_create_environment:
+      # Install poetry
+      # https://python-poetry.org/docs/#installing-manually
+      - pip install poetry
+    post_install:
+      # Install dependencies with 'docs' dependency group
+      # https://python-poetry.org/docs/managing-dependencies/#dependency-groups
+      # VIRTUAL_ENV needs to be set manually for now.
+      # See https://github.com/readthedocs/readthedocs.org/pull/11152/
+      - VIRTUAL_ENV=$READTHEDOCS_VIRTUALENV_PATH poetry install
 
 sphinx:
   builder: html

docs/release_notes.rst

@@ -16,3 +16,4 @@ Release Notes
    release_notes/v0.8.1
    release_notes/v0.8.2
    release_notes/v0.8.3
+   release_notes/v0.9.0

docs/release_notes/v0.9.0.rst

@@ -0,0 +1,28 @@
+v0.9.0
+======
+
+Dropped support for ``Python 3.8`` and addressed dependency vulnerabilities.
+
+Updates / New Features
+----------------------
+
+Python
+
+* Dropped support for ``Python 3.8``.
+
+CI/CD
+
+* Dropped scanning for ``Python 3.8`` and changed default to ``Python 3.9``.
+
+Documentation
+
+* ``ReadTheDocs`` now uses ``Python 3.9``.
+
+* ``ReadTheDocs`` now uses poetry install.
+
+Fixes
+-----
+
+Notebooks
+
+* Added ``pandas`` to ``examples/MNIST_scikit_saliency.ipynb``.