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1. HiC_pipeline HiC_pipeline Public

   An easy-to-use Hi-C data processing software supporting distributed computation.

   Python 55 20

2. HiCPeaks HiCPeaks Public

   A Python implementation for BH-FDR and HiCCUPS

   Python 42 9

3. NeoLoopFinder NeoLoopFinder Public

   A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

   Python 60 16

4. HiCLift HiCLift Public

   A fast and efficient tool for converting chromatin interaction data between genome assemblies

   Python 68 5

5. EagleC EagleC Public

   A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps

   53 8

6. tariks/peakachu tariks/peakachu Public

   Genome-wide contact analysis using sklearn

   Python 60 10