This repository hosts the data validations scripts necessary to check how healthy a SmartSPIM dataset is after the uploading and before performing image processing steps in the cloud.
Some of the validations are:
-
Metadata files defined in the aind-data-schema package, the following files must exist:
- acquisition.json
- instrument.json
- data_description.json
- subject.json
-
Image metadata:
- Bit depth: 16
- Image format: PNG
-
Folder structure