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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 163 32

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 86 27

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 105 30

  4. Hotspot Hotspot Public

    Python 98 15

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

Repositories

Showing 10 of 63 repositories
  • scone Public
    YosefLab/scone’s past year of commit activity
    R 53 12 31 1 Updated Feb 14, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 54 BSD-3-Clause 13 12 3 Updated Feb 12, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 69 MIT 12 3 1 Updated Feb 11, 2025
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 39 BSD-3-Clause 7 8 2 Updated Feb 10, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 2 BSD-3-Clause 3 0 1 Updated Feb 10, 2025
  • mrvi-reproducibility Public

    Nextflow pipeline for MrVI pipelines

    YosefLab/mrvi-reproducibility’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 9 1 Updated Feb 10, 2025
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 22 BSD-3-Clause 8 2 1 Updated Feb 3, 2025
  • yoseflab.github.io Public
    YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 9 0 0 Updated Jan 26, 2025
  • Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    YosefLab/Compass’s past year of commit activity
    Python 105 BSD-3-Clause 30 51 2 Updated Jan 22, 2025
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 21, 2025
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