miRNAprofiling

All scripts are realted to our miRNA profiling paper. Please find more details in our published paper.

Zhuang Liu*, Letian Zhang*, Maria A Toma, Dongqing Li, Xiaowei Bian, Irena Pastar, Marjana Tomic-Canic, Pehr Sommar, Ning Xu Landén (2022) Integrative small and long RNA omics analysis of human healing and nonhealing wounds discovers cooperating microRNAs as therapeutic targets. eLife 11:e80322.

ShinyApp

Download the data and play around with the interactive ShinyApp micro RNA & mRNA

There are five sections as below:

Please contact me if you have any questions.

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
ShinyApp_Xulab		ShinyApp_Xulab
LICENSE		LICENSE
README.md		README.md
miRNA_quantification_miRDeep2.sh		miRNA_quantification_miRDeep2.sh
s1_DEanalysis_miRNA.R		s1_DEanalysis_miRNA.R
s2_miRNA_WGCNA.R		s2_miRNA_WGCNA.R
s3_multiMiR_predicted_targets.R		s3_multiMiR_predicted_targets.R
s4_GOplots_Correlation_miRNA_mRNA.R		s4_GOplots_Correlation_miRNA_mRNA.R
s5_gene set enrichment analysis.R		s5_gene set enrichment analysis.R
s6_microarrayValidation.R		s6_microarrayValidation.R