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45 Open 165 Closed
45 Open 165 Closed
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Issues list

How IsoQuant works when multiple samples are given as input? question Further information is requested
#269 opened Dec 17, 2024 by dslv3y
2
Using Isoquant for single-cell data and de-duplications enhancement New feature or request
#268 opened Dec 13, 2024 by Kyung-TaeLee
1
Hi, just have a quick question, Is it possible to use isoQuant to discover and quantify fusion RNAs? Thanks! enhancement New feature or request question Further information is requested
#267 opened Dec 11, 2024 by yinyuanmtu
6
ModuleNotFoundError: No module named 'pysam' installation Problem with package installation third-party problem Problem is related to other tools, libraries, system etc
#266 opened Dec 9, 2024 by maronem
1
Structural categories not coordinated with isoform IDs weird results Something looks odd in the resulting files
#265 opened Dec 6, 2024 by evayfang2019
4
Handling viral gff files input data Issue is caused by input data
#263 opened Dec 2, 2024 by rebeelouise
6
bgzipped ref fasta take much longer time performance Issues related to computational perfromance third-party problem Problem is related to other tools, libraries, system etc
#260 opened Nov 12, 2024 by baozg
1
adding extra parameters for minimap2 enhancement New feature or request
#259 opened Nov 7, 2024 by baozg
1
Is it necessary to de-redundant the resulting transcript model? question Further information is requested weird results Something looks odd in the resulting files
#257 opened Nov 6, 2024 by wjcre2023
9
Handling BAM files with polyA trimmed question Further information is requested
#256 opened Nov 5, 2024 by omarelgarwany
1
antisense classification for ONT direct RNAseq data algorithm Issue requires algorithmic improvement enhancement New feature or request question Further information is requested
#255 opened Nov 4, 2024 by baishengjun
4
Exon counts when there are genes on both strands algorithm Issue requires algorithmic improvement enhancement New feature or request
#253 opened Oct 22, 2024 by skagawa2
@andrewprzh
2
how does isoquant deal with same cellular barcode across replicate files? question Further information is requested
#252 opened Oct 10, 2024 by sparthib
1
Specify cutoff for number of reads or number of samples. question Further information is requested
#251 opened Oct 9, 2024 by liuzhenyu-yyy
1
Inconsistent read assignment with bam file
#250 opened Oct 9, 2024 by airichli
4
inconsistency between transcript_tpm.tsv and transcript_model_tpm.tsv performance Issues related to computational perfromance
#248 opened Sep 30, 2024 by Mangosteen24
9
input illumina bam
#247 opened Sep 27, 2024 by JhinJhinJhin
1
Tweaking minimap2 parameters in Isoquant question Further information is requested
#246 opened Sep 27, 2024 by sanyalab
1
Issues in KeyError: 'novel' duplicate This issue or pull request already exists
#245 opened Sep 25, 2024 by kerrwelton
4
Repeating error mesage: [W::hts_idx_load3] The index file is older than the data file: input data Issue is caused by input data question Further information is requested
#244 opened Sep 23, 2024 by zli-lilly
10
Understanding how inconsistent reads are reused for de novo discovery question Further information is requested
#243 opened Sep 22, 2024 by omarelgarwany
7
Visualize.py with linear output enhancement New feature or request
#241 opened Sep 20, 2024 by ljwharbers
1
GFF3 cannot be recognized bug Something isn't working enhancement New feature or request fixed in release Issue resolved and the fix is released, waiting for approval input data Issue is caused by input data
#240 opened Sep 20, 2024 by sanyalab
4
BrokenProcessPool Error when Running IsoQuant with Custom GTF
#238 opened Sep 10, 2024 by lebronzhong
1
Single cell data one library with different conditions question Further information is requested
#234 opened Sep 4, 2024 by vasikara17
2
ProTip! Follow long discussions with comments:>50.