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Number of mincs inserted in the mri_upload could be wrong in some cases #119

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merged 1 commit into from
Apr 29, 2016
Merged

Number of mincs inserted in the mri_upload could be wrong in some cases #119

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4 changes: 3 additions & 1 deletion uploadNeuroDB/NeuroDB/MRIProcessingUtility.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -626,8 +626,9 @@ sub registerScanIntoDB {
) = @_;
my $data_dir = $Settings::data_dir;
my $prefix = $Settings::prefix;
my $acquisitionProtocolID = undef;
my (
$acquisitionProtocolID,$Date_taken,$minc_protocol_identified,
$Date_taken,$minc_protocol_identified,
$file_path,$tarchive_path,$fileID
);
my $tarchive_srcloc = $tarchiveInfo->{'SourceLocation'};
Expand Down Expand Up @@ -720,6 +721,7 @@ sub registerScanIntoDB {
$tarchiveInfo->{'DateAcquired'}
);
}
return $acquisitionProtocolID;
}

################################################################
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14 changes: 13 additions & 1 deletion uploadNeuroDB/minc_insertion.pl
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Original file line number Diff line number Diff line change
Expand Up @@ -404,12 +404,24 @@
# to keep optionally controlled by the config file #############
################################################################

$utility->registerScanIntoDB(
my $acquisitionProtocolIDFromProd = $utility->registerScanIntoDB(
\$file, \%tarchiveInfo,$subjectIDsref,
$acquisitionProtocol, $minc, \@checks,
$reckless, $tarchive, $sessionID
);

if ((!defined$acquisitionProtocolIDFromProd)
&& (defined(&Settings::isFileToBeRegisteredGivenProtocol))
) {
$message = "\n --> The minc file cannot be registered ".
"since $acquisitionProtocol ".
"does not exist in $profile \n";
print LOG $message;
$notifier->spool('minc insertion', $message, 0,
'minc_insertion', $upload_id, 'Y',
$notify_notsummary);
exit 10;
}
################################################################
### Add series notification ####################################
################################################################
Expand Down