Add a tool to produce 3D rendering of the face for visual QC of the defaced images #415
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@PapillonMcGill thanks for your review. I integrated your comments. Please re-review at your convenience. Thanks! |
PapillonMcGill
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Apr 11, 2019
nicolasbrossard
requested changes
May 7, 2019
added the batch run pipeline qc face tool script added the perldoc for those tools scripts add batch run pipeline qc removed duplicated file melanie's feedback
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nicolasbrossard
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nicolasbrossard
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Description
This PR includes a modified version of the MINC tool
pipeline_qc_face.plto work with the LORIS-MRI pipelines inuploadNeuroDB/binand a tool script that allows runningpipeline_qc_face.plin parallel on multiple CPUs.Those new tools will create a 3D rendering of the face to ensure that the defacing went properly. They will produce jpeg files in a directory specified using the
-out_basediroption ofbatch_run_pipeline_qc_face_script.plthat can be looked at to make sur the face was properly scrubbed.This resolves